Clupea harengus (Atlantic herring): 122129547
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Entry
122129547 CDS
T09045
Symbol
capn1a
Name
(RefSeq) calpain 1, (mu/I) large subunit a
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04141
Protein processing in endoplasmic reticulum
char04210
Apoptosis
char04217
Necroptosis
char04218
Cellular senescence
char04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122129547 (capn1a)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
122129547 (capn1a)
04217 Necroptosis
122129547 (capn1a)
04218 Cellular senescence
122129547 (capn1a)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122129547 (capn1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
char01002
]
122129547 (capn1a)
Enzymes [BR:
char01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
122129547 (capn1a)
Peptidases and inhibitors [BR:
char01002
]
Cysteine peptidases
Family C2: calpain family
122129547 (capn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
EF-hand_7
EF-hand_8
Lyase_8_N
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
122129547
NCBI-ProteinID:
XP_042560418
UniProt:
A0A8M1KDQ3
LinkDB
All DBs
Position
Unknown
AA seq
703 aa
AA seq
DB search
MFSYGGISANISADRLKAEGMGSNEQAVHFLNQDYEALKQECLETGCLFEDPCFPAEPPS
LGFKELAPYSSKTRDVEWLRPTELTDDPQFILGGATRTDICQGALGDCWLLAAIASLTLN
ERLLHRVVPHGQGFQEDYAGIFHFQFWQFGEWVDVVIDDRLPVKDGELMFVHSAEGNEFW
SALLEKAYSKLCGSYEALSGGSTTEGFEDFTGGVSEMYELKQPPRDLYRIISKALERGSL
LGCSIDITSNFDMEAVTFKKLVKGHAYSLTGLKQVDFRGDLEKLIRVRNPWGQVEWTGAW
SDNSPEWDEIDPSEREDLHLQMEDGEFWMSFNEFLRQFSRLEICNLTPDALSGDDMSHWN
TIKFHGTWRKGSTAGGCRNNPNTFWINPQYKITLLEEDDDPEDEEVACSFLVALMQKDRR
RYRKQGQDMHTIGFAIYEIPEEFAGCQNVHLKKNFFLAHSSCARSETFINLREVSTRLRL
PPGEYLIVPSTFESGKEADFVLRVFTEKQSETEELDDEISADLVDEEITEDDIGDGFKSM
FAQLAGEDMEISVRELRTILNRVMSKHKDLQTDGFSMESCRTMVNLMDKDGSARLGLVEF
QILWNKIRKWLEIYRQFDLDKSGAMSSYEMRLAVESAGFKLNNKLNQVLVARYAENEVID
FDNFICCLIKLETMFRSFRDLDRDGSGVAEMNLTEWLYMTMCG
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgttttcttacggagggatatcggcaaacatctccgcagacaggctgaaggcagagggg
atgggttccaacgagcaggccgttcacttcctcaaccaggactacgaggccttgaagcag
gagtgccttgagacgggctgcctcttcgaagacccctgcttccccgccgagcccccttct
cttggcttcaaggagctggcgccttactcctccaagacacgtgatgtggagtggttgagg
ccaacggaactgacagatgatcctcagttcattctgggtggggccaccaggacggacatc
tgccaaggagcacttggtgactgttggctcttggctgccattgcttcccttactctcaat
gagaggcttcttcacagggtggtcccgcatggccagggcttccaggaggattatgctgga
attttccattttcagttctggcagtttggggagtgggtggacgtggtgattgacgaccgg
ctcccagtgaaagatggcgagctaatgttcgtccactcggccgagggcaacgagttctgg
agcgccctgctggagaaggcatactccaagctgtgtggctcctacgaggccttgtctgga
ggcagcaccactgaagggtttgaggatttcaccgggggcgtgtcagagatgtatgagctc
aagcaaccaccgcgggacctatatcgcatcatcagcaaagcccttgagagaggctccctg
ctggggtgctctatcgatatcaccagtaacttcgatatggaagcggtgacatttaagaag
ttggtgaagggccatgcttattcattgactggtcttaaacaggtggacttcagaggtgac
ctggagaagttgatccgcgttaggaacccctggggtcaggtggaatggacaggagcgtgg
agtgacaactcacctgaatgggatgaaattgacccatctgagagagaggatctccatcta
caaatggaggatggggagttttggatgtcctttaacgagttcctgaggcagttctcgcgt
ctggagatctgtaacctcacgccggatgcgctgagtggagacgacatgagccactggaac
accatcaagtttcacggcacttggaggaagggcagcactgcagggggctgcaggaacaac
cccaacacattctggataaatccccagtataagatcactctgctggaggaggacgatgac
cccgaggacgaggaagtggcctgcagcttcctggtggctctgatgcagaaggaccgcagg
cgataccgcaaacaaggccaggacatgcacaccattggcttcgccatctatgagattcca
gaggagtttgctggctgccagaatgtgcacctgaagaagaacttcttcctggctcactcc
tcgtgtgcacgctccgagaccttcatcaacctgagggaggtgagcacccgtctgcggctg
cccccgggggagtacctcatcgtcccctccacctttgagtccggcaaggaagccgacttc
gtgctgcgggttttcaccgagaagcagtcggaaacagaggagctggatgatgagatctct
gcagatctggtggatgaggaaatcacagaggatgacattggtgatggcttcaagtccatg
tttgcacagctggcaggggaggacatggagatctctgttcgtgagctccggaccattctc
aacagagtgatgtcaaaacataaggaccttcagactgatggcttcagtatggagtcatgt
aggaccatggtcaacctaatggataaagatggcagtgctcgcttagggttggtggagttt
cagattctgtggaataaaatcagaaagtggctggaaatctacagacagtttgaccttgac
aaatcaggggccatgagctcttatgagatgcgccttgctgttgaatcagcaggcttcaag
ctcaacaataagctgaaccaggtcctggtggcccgatatgcagaaaacgaggtcatcgac
tttgataacttcatttgctgcctgatcaagctggagaccatgttccgttcctttcgggat
ttagacagagatggatctggggttgcagaaatgaatttaactgagtggctgtacatgacc
atgtgtggttga
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