Clupea harengus (Atlantic herring): 122129828
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Entry
122129828 CDS
T09045
Symbol
abca1a
Name
(RefSeq) phospholipid-transporting ATPase ABCA1a isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char02010
ABC transporters
char04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
122129828 (abca1a)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122129828 (abca1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
char02000
]
122129828 (abca1a)
Transporters [BR:
char02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
122129828 (abca1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
Motif
Other DBs
NCBI-GeneID:
122129828
NCBI-ProteinID:
XP_042560483
UniProt:
A0A8M1KDX3
LinkDB
All DBs
Position
Unknown
AA seq
2260 aa
AA seq
DB search
MAVSTQLGLLLWKNFTYRRRQTLQLIIEIIWPLFIFFILISVRLYYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEKPGVVGNFNDSIISRLFIDAKKILLYSQNDK
SFEGFKGLVRALRKLQRNTAGFKLKDFLRDNETLSGFLERNATLSKHAVHQIVEADVNLE
KVLIKGFGVHLKDLCNNTSLDDFVDIADKDVAQLTQNIICQSSTEWLDQAERNFLSNLDF
LKPIRKDVRSDPKVVQEVSSATDNLLESLGSLAVELASMKSWRDMRAEIQYLTANATRSP
SHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNYGNSSEDEPVSAYDNTSTPYC
NNMMRSLESSPISRMIWKALKPLLMGKILYTPDTPATQRIIQEVNKTFQELGVLRDLGGM
WDEFRPKLWNFMEDSEEMDLVRTLLQNNASARFFNAKLSGTEYRVEDIASFLSKERPPGT
AFTWREVFNETDQAIQTISRFMECVNLDKLEPVATEERLVNKSMRLLDDRKFWAGIVFPD
MQANSADLPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFSYLQDII
ENGIIRALTGSKEKTGVYFQQMPYPCYVDDMFLRVMSRSMPLFMTLAWMYSVAIIIKGVV
YEKEARLKETMRIMGLNNGTLWLSWFISSLIPLLISAGLLVVLLKMGNLLPYSDPGVVFL
FLSSFAVVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGAKVFAS
LLSPVAFGFGCEYFALFEEQGVGIQWTNLLASPMEEDHYSLTTSICLMLFDAFLYAVMTW
YIEAVFPGQYGIPRPWYFPFTKTYWCGEECGGASTSSDKKSNAEAVCIEEEPTHLARGVY
IENLVKVYSHGKKLAVDGLSLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL
GKDIQTELSTIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKSEMEQIIKDVG
LPNKRKSRTNQLSGGMQRKLSVALAFVGGSRVVILDEPTAGVDPYARRGIWDLLLKYRQG
RTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDFEPPLSS
CRNSSSTVSYIKKEDSVSESSSDAGLGSDHESETTTIDVSLISNVIFKHVPSARLVEDLG
HELTYVLPYESAKAGAFVELFHEIDDRLTYLGISSYGISDTTLEEIFLKVAEDSGVDVVD
VSDGTIPTRRNRRHAFGDHQSCLRPFTEDDFDLNDSEGVPESRETDWLGGADGKGSYQVK
GWSLRRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLQLE
PSMYEEQFAFISNDAPEDTDTNMLLGALTDGHGVWPSCTERDSDPNALCGIADEDWAVPE
LPVSVSDIFLTGNWTMENPSPRCECSCDGRKKMLPECPPGAGGLPPPQIKVGAKDTLQNL
SGRNISDYLVKTYAQIIGKSLNNKLWVNEFRYGGFSLGARSSQLMPPPDEIDDAISHLKR
RFSLETGTAADRFLGSLSNFIQGLDTKNNVKIWFNNKGWHSMGAFLNVMNNAILHSSLKE
DDRGKFGINAFNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERT
NKAKHMQFISGVQPLLYWAANFVWDMCNYVVPATLVIIIFVCFQQEAYVSSTNLPVLALL
LLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELFGSNEVGGIND
ILKNVFLIFPHFCLGRGLIDMVKNQAMSDALERFGENRFRSPLAWDMVGKNLFAMAVEGV
VFFTITVLIQYRFCLKARPIKTLLTPIGEEDEDVARERQRILTGLGQSDILEIKQLTKVY
KRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSVVTSGEAYLAGKSVLTEM
HEVHQKMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVADWGIRKLGLAKYMDKA
AGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKARRALWNCILSIIKEGRSVVLTS
HSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPDPDLGPVMEFIEH
ELPGSTLKERHRNMLQYQLPSSLTSLARIFSLLSNHKKQLRIEDYSVSQTTLDQVFVNFA
KDQSDEDHLKDIASSKRDAVVDLSQLSAFLEDEKTKESLV
NT seq
6783 nt
NT seq
+upstream
nt +downstream
nt
atggctgtatctactcagctaggcttgcttttgtggaagaatttcacatatcgtcggaga
caaacgctccagttgataattgagatcatatggcccctgttcatctttttcatcctgata
tcagttcgtctgtactaccctccttatgagcaacatgaatgccactttcccaataaggcc
atgccatcagcaggcacactgccctgggttcagggcattatctgcaatgccaacaacccc
tgcttccgttaccccaccccaggagagaagcctggagttgtgggcaacttcaacgactcc
atcatctcacgactgtttattgatgccaagaagattctcctgtacagccagaatgataag
agctttgaaggattcaagggacttgttcgggctttaagaaaattgcaacgtaacactgct
ggtttcaagctgaaagactttctccgtgataatgagaccttgtctgggttcctggagcgg
aatgcgactctttcaaagcacgccgtccatcaaattgtggaggctgacgttaacctggag
aaggtcctcatcaaaggttttggtgtgcacctgaaagacctgtgcaacaacacctccctg
gacgactttgtggatatagcagacaaggatgtagcacaactgacccaaaacatcatttgc
cagtcttccaccgagtggctcgatcaggcagagagaaactttctgtcaaacctggacttc
cttaagcctatacggaaggatgtgaggtctgaccccaaggttgttcaagaggtgtcctca
gcaacagacaacctacttgagagcctgggatctttagccgtggagctggcgagcatgaag
agctggcgagacatgcgtgcagagatccagtacctgactgccaacgccacacgctctccc
agtcacatgtaccaggccgtgtcccgcatcgtgtgtgggcatcctgaaggtggtggcctc
aagatcaagtccctcaactggtacgaagacaacaactacaaagccctgtttggaaactat
ggcaacagcagtgaggatgaaccagtgtccgcctatgacaacacctccactccttactgc
aataatatgatgaggagtttggagtccagtccgatctctcgtatgatctggaaggccttg
aagccacttttgatggggaagatcctctacacaccagacacccctgcgacacagaggatt
attcaggaggtcaacaagacgttccaggagctgggagtgctgcgtgacctgggtggcatg
tgggatgagttcaggccaaagttatggaacttcatggaagacagtgaggagatggacctg
gtccggaccctactacagaacaatgctagtgcccggttcttcaacgctaagctgagtgga
acggagtaccgggtggaggacattgccagcttcctgtccaaagagaggcccccagggact
gcctttacgtggcgagaagtctttaatgagaccgaccaggcaatacagaccatttcccgc
tttatggagtgtgtaaacttagacaagctggagcctgtggccactgaagagcgtctggtg
aacaagtccatgcgtctcctagacgaccggaagttctgggcgggaatcgtgttcccagac
atgcaggccaacagcgctgaccttccgcccaatgtcaactacaagatccgcatggacatc
gacaatgttgagcgcaccaacaagattaaagacgggtattgggatcctggtcccagggcg
gacccttttgaggacatgcgctacgtctggggcggcttctcctacctgcaggacatcatt
gagaacggcatcatccgagctctcactggcagcaaggaaaaaactggcgtctacttccag
cagatgccctacccttgctatgtggatgacatgtttctgcgtgtgatgagtcgctccatg
cccctgttcatgaccctggcctggatgtactctgtggccatcatcataaagggcgtggtc
tatgagaaggaggccaggctgaaggagaccatgaggatcatgggattgaacaatggcacc
ctgtggctcagctggttcatcagcagcctcatccccctgctcatcagcgccggtctgctg
gtggtcctcctcaagatggggaacctcctcccatacagtgacccgggggtggtcttcctg
ttcctgagctcgtttgctgtggtgaccatcatgcagtgcttcctcatcagcaccctcttc
tcccgtgccaacctggcagctgcctgcggcggcatcatctatttcaccctctacctcccg
tacgtgctctgtgtggcctggcaggactatgtgggcttcggggccaaggtgtttgcgagt
ctattgtctcccgtggcttttgggtttggctgtgagtactttgcgctgtttgaggagcag
ggtgtgggcatccagtggactaacctgctggccagccccatggaggaggaccactacagc
ctcaccacttccatctgcctcatgctgttcgacgctttcctctacgccgtcatgacctgg
tacatcgaagcagtcttcccaggtcagtatggcatcccccgaccgtggtatttcccattc
accaagacctactggtgtggagaggagtgtgggggagcttcaacctcttcagacaagaag
agtaatgctgaagctgtgtgcattgaggaggagcctacccaccttgctcgtggtgtctac
attgagaatctggtaaaggtgtacagccatggcaaaaagctggcagtggacggcctaagt
cttggattctatgagggtcagataacatcatttttgggccacaacggagctgggaagacc
accaccatgtcgatcctgacaggcttgttccccccgacatcaggcacagcctacattctg
ggcaaagacattcaaactgagcttagcaccatccgccagaaccttggtgtctgtccacag
cacaacgtcttattcagcatgctgacagtagaggagcatatctggttctatgctcgtctg
aaggggctctctgaggagaaggtgaagtcagagatggagcagatcatcaaggatgttggc
ctgccaaacaaacgcaaatcccgcaccaaccaactctctggagggatgcagaggaaactt
tctgtagcgctggcctttgtaggaggatctcgagtggttattttggatgaacccactgct
ggagttgatccttatgcacgtagaggcatctgggaccttctgctcaagtatcgtcaaggc
cgcactatcatcctctccacccaccacatggacgaggcagacatcttgggtgaccgtatc
gccattatctcccatggcaagctgtgctgtgtgggctcctccctcttcctcaagacccag
ctggggaccggttactacctgaccctggtcaagagggactttgagccaccactcagctcc
tgcaggaactccagcagcactgtctcctacatcaagaaggaggatagtgtctcagaaagc
agctctgatgccggtttaggcagtgaccatgaaagtgaaaccacaactatcgatgtctct
ctcatctcaaacgtgatcttcaagcatgtcccatctgctcggctggtggaggatctaggt
catgagctcacatacgtcctgccgtacgagtccgccaaggcaggggcgttcgtggagctc
ttccacgagattgacgaccgcctgacttacttgggcatctctagctatggcatctctgac
accacactggaggagattttcctgaaagtggcggaggacagtggagttgacgttgttgac
gtttcagatggcaccattccaacacgcagaaaccgtaggcacgcttttggggaccatcag
agctgcctgaggcctttcaccgaggacgactttgacctcaatgactcagaaggtgtgcca
gaatctcgtgagacagactggctgggtggtgcagatggcaaaggctcataccaggtcaag
ggctggagcctgaggaggcaacagtttgtggccttgctgtggaagaggttcctgtatgca
cggcgctccagaaaaggcttctttgctcagattgtgttgcctgctgtgtttgtctgcatc
gccctggtcttcagcctcattgtccctccatttggaaagtaccccagcctgcagctagaa
ccgagcatgtatgaagagcagttcgccttcatcagcaacgacgcccctgaagatactgac
acaaacatgctcctgggtgccctgactgatggccatggagtttggcctagttgcactgaa
agagattcagatccgaacgctttgtgtgggatcgctgatgaggactgggctgtccctgag
cttcctgtcagtgtgagtgacatcttcttaaccgggaactggacgatggaaaatccgtca
cccaggtgcgagtgcagctgtgacggacgaaagaagatgctgccggaatgtccccctgga
gctggaggtcttccacccccacagattaaagtcggcgcaaaagacactctgcagaatctg
tcaggaagaaacatatcagactaccttgtgaaaacctacgctcagatcattggaaaaagc
ctgaacaataaactctgggtcaatgaattcaggtatggagggttctcactgggtgccagg
agttctcagctcatgccccctcccgatgagatcgatgatgccatttctcacctcaagaga
cgcttcagcctagaaacgggaactgcagctgaccgcttccttggtagcctctccaacttc
atccaaggcctggacacaaagaacaatgtcaagatttggttcaacaacaaaggctggcac
agcatgggggccttcttgaatgtgatgaacaatgccatcctgcactccagcctgaaggaa
gatgaccgtggcaagtttggcatcaatgccttcaaccatcctctcaacctcaccaaggag
cagctgtcacaggtggcactgatgaccacctcagtggacgtgctggtgtccatctgtgtg
atcttcgccatgtccttcgtcccggccagctttgtggtcttcctcattcaggagcgcacc
aacaaagccaaacacatgcagtttatcagtggtgttcagccattactctactgggcggcc
aactttgtctgggatatgtgcaactacgttgtccctgcaacccttgtcatcatcatcttt
gtgtgcttccaacaagaggcgtatgtctcctccaccaacctgccagtcctggccctgctg
ctgcttctctatggatggtccatcacacccttgatgtacccagcctcattcttcttcaag
atccctagcacagcctacgtggtcctcactagtgttaacatcctcattgggatcaatggg
agcgtctcaacctttgtgctggagctgtttggcagcaatgaagtcggtggcatcaatgat
atcctgaagaacgtgttcctcatcttccctcacttctgtcttggtcgcggcctcatcgac
atggtgaagaaccaagccatgtcagacgccctggaaagattcggagagaaccggttccgc
tccccgctggcctgggacatggtaggcaaaaacctctttgccatggctgtggagggcgtg
gtcttcttcaccatcactgtgctcatccagtaccgcttctgcctcaaggccaggcccatc
aaaaccctcctgacgcctatcggggaagaggatgaggatgtggccagagagaggcagagg
atcctgaccggattagggcagtctgacatcctggagatcaaacagctcaccaaggtttac
aagaggaagcagaagccagcagttgaccgcctgtgtgtgggcatccctccaggagagtgc
tttggcctgctgggtgtaaatggagctgggaagacaagcaccttcaagatgctgacagga
gactctgtggtcaccagcggagaagcctatcttgctggtaaaagtgtgctcacggagatg
catgaggtgcatcaaaaaatgggctactgcccgcagtttgatgccatcaacgacctgctg
actggcagagaacatttggaattctatgccattctgagaggagtacctgaaaaggaagtg
tgtgaggtggcagattggggaattcgtaagctgggcctggcgaagtacatggataaagca
gcagggagctacagcggggggaacatgcgcaaactctccaccgccatggctctgatcgga
ggtcctcccgtggtgttcctggacgagcccacgactggtatggaccccaaggcccggcgg
gccctctggaactgcatcctcagcatcattaaagagggccgctcagtggtgctcacctcg
cacagtatggaggagtgtgaagccctgtgcacacgcatggccatcatggtcaatggaaga
ttccggtgtctggggagtgtgcagcacttaaagaacaggtttggagacgggtacaccatc
atcctgagggtggcgggccctgacccagaccttggccccgtgatggagttcattgagcac
gagctgccgggcagcaccctaaaggagaggcacagaaacatgctgcagtaccagctgcca
tcttctctcacctccctcgcgcgcatcttcagcctgctctccaaccacaagaagcaactg
cgcatcgaggactactccgtctcgcagacaacactagaccaagtatttgtgaactttgcc
aaggaccaaagtgacgaggaccacttaaaagacattgccagcagcaagagggacgccgtg
gtggacctctcccaactcagcgccttcctggaggatgagaagaccaaggagagccttgtg
tga
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integrated database retrieval system
