Clupea harengus (Atlantic herring): 122130733
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Entry
122130733 CDS
T09045
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR-like
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04137
Mitophagy - animal
char04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122130733
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
122130733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
122130733
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
122130733
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122130733
Multi subunit type E3
ERAD complex
122130733
LMBR1L-GP78-UBAC2 complex
122130733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
G2BR
zf-RING_2
CUE
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_UBOX
zf-rbx1
zf-RING_11
zf-RING_16
zf-RING_5
zf-ANAPC11
Prok-RING_4
zf-C3HC4_4
zf_RING_Vps8
Rad1
Motif
Other DBs
NCBI-GeneID:
122130733
NCBI-ProteinID:
XP_042561405
UniProt:
A0A8M1KFW4
LinkDB
All DBs
Position
Unknown
AA seq
633 aa
AA seq
DB search
MPLMFLERLPWPSLQTYIGLSVVLLAGCTYSAYSTLTDFRLKVSSLDEAPPSSVYDTTQP
PDQDVDSEVVFATVLWYLINDSVYVWVLVNTVCCTLMVFAKIIQWMVFGPLRVSEKQHLK
DKFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAALIFLHLMVQLCKDRFEYLSFSPTTP
LGSHIRVMSLLIGLLLSCCGLGVLCGLWGSAHGMHTLAFMAAECMLVTVRTGHVIMRYSI
HLWDLNHEGTWEGKGSHIYYTDFIMEMVMLSLDLMHHIHMLLFGNIWLSMASLVIFMQLR
YLFHEVQRRLRRHKNYLRVIDNMEARFAVATAEELATNNDDCAICWDTMHTARKLPCGHL
FHNSCLRSWLEQDTSCPTCRLPLNISGDRPHARDPQQRGTLDGNLAPGGPAADTRPHINQ
HNHFFHFDGSRIASWLPSFSVEVMHTTNMLSIAQANNSQLNSMAHQIQEMFPQVPYNLLL
QDLQLTRSVEVTTDNILEGRIQVPFPTQSVERVPLQMSAAPEDSAAGNNSSSSDTMIAEP
ESLEVRGSRFSKSAEERQKMLLQRKEELLQQARRRFIKKSPGEEEEDMYEDYEDEELPSL
EEAEPSSNPALRKRHTLTAAAEHHGHMQQDTLE
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgccactgatgtttttggagagattaccatggcccagtttgcaaacttacatagggctc
agcgtagtcctgctagcaggatgcacctacagcgcttacagcaccctgacagattttagg
ctgaaggtgtcatctttggacgaagctccccctagctctgtttatgacaccacccagccc
cctgatcaagatgtggacagtgaagttgtgttcgccacagtgttgtggtaccttattaat
gacagcgtttacgtttgggtgcttgtcaacacggtttgctgcacccttatggtcttcgcc
aaaataatccaatggatggtttttggacccctcagagttagtgagaagcagcacttgaag
gacaagttctggaacttcatcttctacaagttcatctttatttttggcgtcctgaacgtg
cagaccgtggaagaggtggtgatgtggtgcctctggtttgctgctctcatcttcctccac
ctcatggttcagttatgcaaggaccgctttgaatatctctccttctcgccgaccaccccc
ctgggcagtcacattcgggttatgtccctgctgattggcctcctcctgtcctgctgtggc
ctgggagtgctgtgtggcctgtgggggtcggcccatggcatgcacaccctggcgttcatg
gctgccgagtgtatgttggtgactgtacgcactggccatgtcatcatgcgttattccatt
cacctctgggatctaaaccatgagggcacctgggagggcaaaggcagccacatctactac
actgactttattatggagatggtcatgctgtccctggatctcatgcatcacatccacatg
ttgctctttgggaacatctggttgtccatggccagcctggtgatcttcatgcagctgcgc
tacctgttccacgaggtgcaacgccgcctgcgccgccacaagaactacctccgcgtcatc
gacaacatggaggccagatttgcagtggcaaccgcagaggagttagcaaccaataacgat
gactgtgctatctgctgggataccatgcacactgcacgcaagctgccatgtggccacctc
ttccacaactcctgtctgcgttcatggttggagcaggacacctcatgtccgacctgccgg
ttgcctctgaacatcagcggagaccggccccacgcccgggaccctcagcagaggggaaca
ctggatgggaacctggcccctgggggccctgctgcagacacccgaccccatatcaaccag
cacaatcactttttccactttgatggttctcgtattgccagctggctgcccagtttctca
gtggaggtcatgcacaccaccaacatgctgagtattgcacaggctaacaactcccagctg
aattctatggcccaccagatccaggagatgttcccccaggtgccttataacctcctcctc
caggacctccagctcacacgctctgtggaggtcaccactgataatatactggaaggacgc
atccaggtgcccttccctactcagtcagtggagcgggtccctcttcagatgagtgcggcc
cctgaggattcggcagcggggaacaactcctcgtcctctgacaccatgattgcggaaccc
gagagccttgaggtgcgaggcagccgcttctccaagtctgcagaggagcggcagaagatg
ctgctgcagaggaaggaggaactactccagcaggcacgcaggaggtttattaagaagagc
ccaggagaggaagaggaggacatgtacgaggattatgaagatgaagagttgccatctcta
gaggaggctgagcccagctcaaacccagcgctgcgcaaacgtcacactctcacagcggct
gccgagcaccacgggcatatgcagcaagacaccttagagtga
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