Clupea harengus (Atlantic herring): 122130988
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Entry
122130988 CDS
T09045
Symbol
msh2
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122130988 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
char03400
]
122130988 (msh2)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122130988 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
122130988
NCBI-ProteinID:
XP_042561804
UniProt:
A0A8M1KJ24
LinkDB
All DBs
Position
Unknown
AA seq
937 aa
AA seq
DB search
MAVQPKQNLSMDSASEAGFLSFFFSMPXKPDTTFRIFDRNDYYTVHGKDAIYAAKEVFKT
NGVIKNLGSGSKKLESVVLSKMNFESFVRDLLLVRQYRVEVYRNKAGGKKENDWQIEYKA
SPGNLAQFEEILFGGGGAPGEGVAGVVGIRVGSGPDGQRVVGVGYVDSILRKVGVCEFPD
NDQFSNLEALLVQIGPKECVLPVGDAGGDAGKMRQVVLRGGVLLSDRKKSEFTTKDIVQD
LDRLLRARKGESVSSAALPEMEKQIAVSCLAAVIKYLELLSDEANFNSYKITSFDLHQFM
RLDNAAVNALNLFPGSDSTVASHSLSGLLNRCRTPQGQRLVNQWIKQPLIDKNKIEERLD
LVESFMEDSELRQSCQEDLLRRFPDLNRLAKKFQRHSATLQDCYRAYQAVGHLPALVLAL
QRYNGKHEVLLSAVFITPLNDLVLDFSKFQDMIETTLDMNQIEHHEFLVKPSFDPTLSEL
RESMDKLEKGMQAVLTSGAKELGLDAGKTMKLESNAQHGYFFRVTCKEEKGLRNNKKFTT
LDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEILGIASGYLDPLHTLNEVIAQ
LDAVVSFALVSHAAPVPYVRPRMLEKGSGRLLLKGSRHPCVEAQDDVAFIPNDVSFTRSK
ETFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCEEAEVSVVDCVLARVGAGDSQIKG
VSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEHIATELRSFCLFA
THFHELTALAQQLPNVHNLHVTALTTHDTLTMLYRVKKGVCDQSFGIHVAELANFPPHVI
ASAREKALELEEFQDLSPQEAGDSEGPEAKRRCLQKQEGERLIEGFLAQVKALPLEGLTE
EAVKQRLCELKTELKAHNNSFVNEIVHRASSSKMVST
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccaaagcagaacctgtctatggacagtgcctccgaagcgggtttctta
agcttttttttctctatgcccngaaaaccagacacgacgttccggatttttgatcgcaac
gattactatactgtacatggaaaagatgccatttatgcagcaaaagaagttttcaagact
aatggagttatcaaaaatctcggatcagggagcaagaaacttgagagcgtggttctcagt
aaaatgaacttcgagtcttttgtgcgagatctgctcctggttcgccagtaccgcgtcgag
gtctacaggaacaaggctggcggcaagaaagagaacgattggcagatagaatacaaggct
tcaccaggaaatttggctcagttcgaggagatcctgtttggtggcggtggggccccagga
gagggtgtagcgggagtggtcgggattcgtgtgggctccgggccggacggacagcgagtg
gtgggcgtgggttacgttgactccatcctcaggaaagtcggcgtttgtgagttccccgac
aacgatcagttctccaacctggaggccctgctggtgcagatcgggcccaaggagtgtgtg
ctgcccgtgggggacgcagggggagacgctggcaagatgagacaggttgtcctgcgaggt
ggcgtcctcttgtcagataggaagaagtcagagttcaccacaaaggacattgtacaggat
ctggacagactgctgagagcacgcaagggtgagagtgtgtccagtgctgccctgccagag
atggagaaacagattgccgtgtcctgcctggcagcggtcatcaagtatctggagctcctg
tctgatgaagccaacttcaactcctacaagataacgtcctttgacctgcatcagttcatg
cgtctggataatgctgctgtgaatgcactcaacctgttccctgggtcggactcaacggta
gcctcccactccctctcggggcttctgaacaggtgcaggaccccccaaggccaacgcctg
gttaaccagtggatcaagcagcccctgattgacaagaataagattgaggagagactggat
cttgtggaaagcttcatggaggactctgagctgaggcagagctgtcaggaggacttgctc
cggcgcttccctgacctcaaccgtctggccaagaagttccagaggcacagtgctaccctg
caggactgctaccgtgcctaccaggctgtgggtcatctacctgcactggtcctggccctg
cagcgctataatggaaaacatgaggtcctcttgagtgcagtttttatcactccgctcaac
gacctcgtcttggatttctccaagttccaggatatgattgaaaccacgctggacatgaac
cagattgagcaccatgagttcctggtgaagccgtcatttgacccgactctgagcgagctg
agggagagcatggacaagctggagaagggcatgcaggccgtgctgaccagtggtgccaag
gaactgggtctggatgctggaaagactatgaagctggagtcgaatgctcaacacggctac
tttttcagagtgacctgcaaggaagagaagggtctgaggaacaacaagaagttcaccaca
ctggacgtgcagaagaatggagtgcgcttcacaaacagcaaactgagctctctaaatgaa
gagtacactaagagccgagaggagtacgaagaggcccagaatgccattgttaaggagatc
ctcggcattgcttcaggttacttggaccctctgcacactctgaatgaggtgatcgcacag
ctggacgcagtcgtaagctttgcgctggtgtcccacgctgccccagtgccgtatgtgcgt
ccacgcatgctggagaagggctcaggccgcctgctgctcaaggggtcacgccacccctgc
gtggaagcacaggacgacgtggccttcatccccaatgacgtgtccttcacccggagcaag
gagactttccacatcatcacaggtcctaacatggggggcaagtccacctacatccgtcag
gtaggagtgatcgtgctgatggcacagatcggctgctttgtgccgtgtgaggaggcggag
gtgagcgttgtggactgcgtgttggcacgtgtgggtgctggagacagtcagatcaagggc
gtgtccaccttcatggctgagatgctggagacggcggccatccttcgctcagccacggaa
gactccctcatcatcattgacgagctgggccggggcacgtccacgtatgatggctttggc
ctggcctgggccatctctgagcacattgccaccgagctgcgctccttctgcctgtttgcc
acgcacttccatgagctgaccgcactggcccagcagttgcccaatgtccacaacctgcat
gtcactgcactgaccacccacgacacactcaccatgctctacagggtcaagaaaggtgtg
tgtgatcagagctttgggatccatgtggcggaactggccaacttccctccacatgtgatc
gccagcgcgcgggagaaagccctggagttggaggagttccaggacctctcccctcaggag
gctggtgactctgagggtccggaggccaagaggcgctgcctccagaaacaggagggggag
cgtctgatcgagggtttcctggcacaggtgaaggccctgcccctagagggcttgactgag
gaggctgtcaagcaacgactgtgtgaactcaagactgagctcaaagcccacaataacagc
tttgtcaacgagattgtgcatcgggcttcttccagcaagatggtctccacttga
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