Clupea harengus (Atlantic herring): 122131470
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Entry
122131470 CDS
T09045
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
122131470 (rc3h1b)
04121 Ubiquitin system [BR:
char04121
]
122131470 (rc3h1b)
Transcription factors [BR:
char03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
122131470 (rc3h1b)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122131470 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
zf-CCCH_UNK
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
122131470
NCBI-ProteinID:
XP_042562135
UniProt:
A0A8M1KHW5
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNSALLQLVGGQVPKLQPVALITNPEDTKHYDEARQCVEELALYLKPLSSVRGVG
LSNAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGSDQQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPCSGVLLPEDGVSLEGVTRKPSP
LTNGIVAAGSGAQMPQLIARGADPTYDLLRKPKLDSQSLSAPGSPPDSVASEHLSMPKQM
PVVPRAPQMYSQQQPEIFYSETRAPPSGSQYDPSQYQTGNPYPYQAPQYVQRYIRNPPPP
NDSAVPAYQDSYPSYVPERPYPAPHSGPAFSTGNPHGFPPPPHYDGRRHTPYPGHPPPQS
YATPRDELVRMSPVPVDVPQAPMPPPPSGSSLYHPDSRERYPPEGYPPPGPHPGQMRSYV
RDPYSRSQPSLDYLHRRRKEIMAQLEERKVISPPPFAASPTLPHNFPNDYPQEYLDECSK
VFGKGREQDYAGQYSPWSCDTIGSYIGTKDGKNKDIMGSGGVEMMNVEGKAMRDPPLEAQ
RRSAEAKDDDPIIPFGSLPTVSRFGAISRTSKTGYQTTGPVQAMASSQGSGPKHMTTAAE
YSYGNHGAWGGASYPSHQNMTAQGHFSERMPMPTPDREQLKMELQQVNQQINQQTQVRGM
KAASNSLLLQREASAMAAQPGGGKWSAGGAVSSEQLSMELDHVEREIGKRTREIAMENQV
AHEYKLKAGENGQQDHKAQLEELSLALGEVSNGSSNIVSEASVGGTMLSLTNKTSSLSLC
SADPNSASGADLQKNGVVHSCS
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgcaagccccacaatggacagaatttttgttgtgtccaatatgcacacaaaca
ttcgaggagaccgtgcgcaggcccatcagcctgggctgtggacacactgtctgcaagatg
tgcctgaacaagctgcaccgaaaagcctgtccctttgatcagactgctatcaacacagac
atcgagcagctgcctgtcaactcggccctgcttcaactggtggggggtcaggtgccaaaa
ctgcagcctgttgcccttattaccaacccagaggacaccaagcactatgatgaggcccgg
caatgcgtggaggaactggccctctacctcaaacccctcagcagcgtcagaggggtgggt
cttagtaatgcagcccagagcatgcttagccggcccatgcagcgaaagctggtgacgctg
gtccactgtcagctggtggaggaggagggtcgggtaagggccatgcgagcggcccgttct
ctgggggagaggaccgtcaccgagctcatcctccagcaccagaaccctcagcagctctcg
tctaacctctgggctgctgtgcgggcccgtggctgtcagtttctgggcccagccatgcag
gaggaagccctgaagctagttctgctggcgctggaggatggctcagctctgtccaggaag
gttctggttttgtttgtggtccagaggctggagccccgattcccccaggcctcgaagacc
agcattggccatgtagttcagctgctctaccgagcgtcctgctttaaggtaacgaagcgt
gatgaggactcgtcgctcatgcagctgaaggaagagtttcggacgtacgaggccctacgt
cgcgagcacgactctcagattgtgcagatcgcgatggaggggggcctgcgcatcgcccct
gaccagtggtcctctctgctctatggggaccagtcccacaagtctcacatgcagtccatc
atcgacaagttgcagacaccagcatcgtttgcccagagtgtacaggagctgaccatcgct
ctgcagagaacgggtgatccggccaatctcaacaggctcagacctcacctggagctgctg
gccaacatcgaccctagtccagatgcccccccacccacctgggagcagctggagaagggg
ttggttgccgtgaagacggttgtacacggcctggtggacttcatccagaatcacagcaag
aagggaagcgatcaacaacagcccccccagcacagcaagtataagacatacatgtgccgc
gacatgaagcagaaagggggctgtccccggggagccagctgcaccttcgcccactcacag
gaggagctggaaaagtaccggaagatgaacaagcgcctggcagctcgtctcccatgttcc
ggtgtgttgttacctgaagacggggtttccctggagggggtgacccgtaaaccttcccct
ctcaccaacgggattgtggccgccggctctggtgcacagatgccgcagctgatcgcccgc
ggtgctgatcccacctatgacctcttgcggaagcccaagctggactcccagagcctgagc
gccccgggctccccacctgactcggtggcatcagaacacctctccatgcccaagcagatg
cccgttgtgcctagagctccacaaatgtactcccagcagcagccagagatcttctactcc
gaaaccagagcaccaccatcagggtctcagtatgacccctctcagtaccaaacaggcaac
ccctacccctaccaagcccctcagtatgtccagagatacatccgaaacccaccacctcca
aacgactctgctgtgcccgcctatcaggattcttaccccagctacgtacccgaacgacca
taccctgccccccactctggacctgccttctccacaggaaaccctcatgggttcccacct
ccgccccactacgatggccgccgacacacaccctaccctgggcaccctcctccccagtcc
tatgccactccccgggatgaactggtcaggatgagccctgtgcccgtggacgtgcctcag
gcacccatgcctccacctccctccggtagctccctctaccacccagactcccgggagagg
tatccacccgaaggctaccctccccctggaccccaccctggccaaatgaggtcttatgtg
agggacccttacagccgctcccagcccagcctggactatctgcaccgcagacgcaaggag
atcatggcccagctggaggagaggaaggtcatctctcccccgcccttcgctgcctccccc
actcttccccacaacttccccaacgactacccacaggagtaccttgacgagtgctccaaa
gtctttggaaagggccgtgagcaagattacgcagggcagtattcgccttggtcgtgtgac
accataggatcttacatcggcaccaaggacggcaagaacaaagacatcatgggaagtggt
ggcgtcgagatgatgaatgtggaggggaaagctatgcgggaccctcctctggaagcccag
cgccgctccgcagaagccaaagatgatgatcccatcatccccttcggctcattgcccaca
gtctcgcgctttggcgccatctcgcgcacatccaaaacgggctaccagaccactggcccc
gtgcaagccatggcctcctcacaaggctcaggacccaagcacatgaccaccgcagcggag
tactcctacgggaaccatggcgcctgggggggagcgtcttacccttcacaccagaacatg
accgctcagggacacttcagcgagcgcatgcccatgcctactcctgaccgagagcagctg
aagatggagctgcagcaggtcaaccagcagataaatcagcagacacaggtccgtggcatg
aaggctgccagtaactctctgcttctgcagagggaggctagtgctatggcggctcagcct
gggggggggaagtggtcagcaggaggcgctgtgtccagtgagcagctcagtatggagcta
gaccacgtggagcgagagatcggcaagaggacccgagagatcgccatggagaatcaggtg
gctcatgagtacaaactgaaggccggtgagaatggccagcaggaccataaagcccagctg
gaagagttgtcccttgccctgggtgaggtttcaaatggatccagtaacattgtgtctgag
gccagtgtgggtggaaccatgttgtccctgaccaataaaacgtcatcgctcagtctgtgt
tctgcagaccccaactcagccagcggggcagacctgcagaagaacggtgtggtccactcc
tgctcgtag
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integrated database retrieval system
