Clupea harengus (Atlantic herring): 122131833
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Entry
122131833 CDS
T09045
Symbol
shha
Name
(RefSeq) sonic hedgehog protein A isoform X1
KO
K11988
sonic hedgehog
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
122131833 (shha)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
char01002
]
122131833 (shha)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
char00536
]
122131833 (shha)
Peptidases and inhibitors [BR:
char01002
]
Cysteine peptidases
Family C46: hedgehog family
122131833 (shha)
Glycosaminoglycan binding proteins [BR:
char00536
]
Heparan sulfate / Heparin
Morphogens
122131833 (shha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
DUF7764
Peptidase_M15_3
Vint
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
122131833
NCBI-ProteinID:
XP_042562456
UniProt:
A0A8M1KEH8
LinkDB
All DBs
Position
Unknown
AA seq
418 aa
AA seq
DB search
MLLLTRVMLVGLLCLSLVSSGLGCGPGRGYGRRKHPKKLTPLAYKQFIPNVAEKTLGASG
RYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNSLAISVMNQWPGV
KLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGFDWVYYESKAH
IHCSVKAENSVAAKSGGCFPGSASVTLRNGVRKEVKDLRPGDQVLSADSAGNLVYSDFIM
FVDQDSTTRRVFYVIETTAPVRKITLTAAHLLFLVNNSTDDLSAMTATFASKVKPGQRVI
IVDDKHAQLKPVTVARIYTKEHEGSFAPVTAQGTIVVNQVLASCYAVIENHNLAHWAFMP
LRLGHHLSTALLPKDHTNSNATWQEDGIHWYSKLLYQMGTWLLDSHALHPLGMSLNSS
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgttaacgagagtcatgctggtcggtttgctctgcttgtccttggtgtcgtcc
gggctgggttgtggtccgggaaggggctacggcaggagaaaacatccgaagaagctgacg
cctcttgcctacaagcagttcattcccaacgtcgcggagaagaccctaggggccagcggc
agatacgagggcaagatcacacggaactctgagcgatttaaagaactgactcccaattac
aatcccgacattatctttaaggatgaggagaacactggcgcggacaggcttatgacacag
agatgcaaggacaagctcaactcgttggctatctcggtgatgaaccagtggcctggcgtc
aagctgcgagtcaccgaaggatgggacgaggacggccaccacttcgaagaatctctgcat
tacgagggccgcgccgtggacataacaacctcagatcgggacaagagcaaatatggcacg
ctttctcggttagccgtggaggctggcttcgattgggtctactacgagtccaaggcccac
attcactgctcagtgaaagcagaaaactcagtggcggcaaaatccggaggatgtttcccg
ggctctgcttctgtaaccctgagaaacggggttagaaaagaggtgaaagatctgagaccg
ggtgaccaagtgttgtcagcagacagcgcgggaaatctcgtctacagcgatttcatcatg
ttcgtggatcaagactcgacgacacgtcgtgtgttttatgtgatcgagacaacagcgccc
gtgcgcaagatcaccctcactgcggcccatctcctgtttctggtcaacaactccacggat
gacctcagcgccatgacggccacgttcgccagcaaggtcaagcccggacaaagggtcatc
attgtcgatgataaacacgctcaattaaagcctgtcactgtggcacggatttacacgaaa
gagcacgagggttccttcgccccggtgacagcgcaaggaacgattgtagtcaaccaggta
ctggcctcctgttacgcagtcatcgagaatcacaacctggcgcactgggccttcatgcca
cttaggttgggccatcatctctccacggcgttactccccaaagaccataccaactcaaac
gccacctggcaagaggacggaattcactggtactcgaagcttctatatcaaatgggaacg
tggctcttggacagtcacgctctccatcctttggggatgtcattaaactcgagttga
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