KEGG   Clupea harengus (Atlantic herring): 122131857
Entry
122131857         CDS       T09045                                 
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
  KO
K10570  DNA excision repair protein ERCC-8
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03420  Nucleotide excision repair
char04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    122131857 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    122131857 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:char04121]
    122131857 (ercc8)
   03400 DNA repair and recombination proteins [BR:char03400]
    122131857 (ercc8)
Ubiquitin system [BR:char04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     122131857 (ercc8)
DNA repair and recombination proteins [BR:char03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      122131857 (ercc8)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 WDR55 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_EML ANAPC4_WD40 Beta-prop_Aladin WDR90_beta-prop_4th WD_LRWD1 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_RIG_1st Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_NUP159_NUP214 Beta-prop_IFT140_2nd Beta-prop_SCAP Nucleoporin_N Cytochrom_D1 Tricorn_2nd
Other DBs
NCBI-GeneID: 122131857
NCBI-ProteinID: XP_042562494
UniProt: A0A8M1KL62
LinkDB
Position
Unknown
AA seq 400 aa
MLSFLTARRTGVDDPLRLRRAESTRRVLSLELNPDRDVDRIHGNGVNTIDIEVIDGRYML
SGGADGVIVIYDLENKNKKPQYTCKAVCTVGRSSRHVHKFSVETVQWYPHDTGMFISSSF
DKTMKVWDTETLKPAEVFHFEGNVYCHHMSPVARKHTLIAVGTKEPKVQLCDLKSGSCIH
VLQGHRGEVLSVKWSPRYEHILATASSDSTVRVWDVRRASGSLFTLDQHNGDKSKAASEA
VNTAHNGRVNGLCFTADGLYLLTTGTDDRMRLWNSATGENTLVNYGKVANASRTCLRLTV
SRGCSPEFVFVPCSSSVAVYSLHTGELVTMLRGHYNNVDCCQFHPDYQELYSGGKDCNIL
AWVPVLRQPDIEVEETATAKGEQQSAVNPVFVDAWSSDED
NT seq 1203 nt   +upstreamnt  +downstreamnt
atgttgagtttcttaacggcaagacggactggagtcgacgatccactccgactgagacga
gcagaatcgacaaggagggttcttagtctggagctgaatcctgatcgggatgtggatcga
atccatggaaatggggtcaatacaatagacattgaagtcattgatggcagatatatgttg
tccggaggtgcagatggagttatagtgatctatgaccttgagaataaaaacaagaaacca
cagtacacctgcaaagcagtctgtacagttggaaggtccagccgccatgtgcacaagttc
agtgtggaaactgttcagtggtatccccatgacacaggcatgttcatatccagctctttt
gacaagaccatgaaagtgtgggacacagagacgttgaagcctgctgaagtgttccatttt
gaaggaaatgtctactgccaccacatgtcccctgtagccaggaagcacacgctcattgca
gttggtaccaaagaacctaaagtacagctgtgtgatttgaagtcggggtcatgcatccat
gtcctgcagggtcacagaggggaggttctctcagtcaaatggtccccgcgatacgagcac
atcttagccacggccagttctgatagcacggtaagagtgtgggatgtgcggcgggcctct
gggagtcttttcactttggaccagcataacggggacaagtccaaagccgcctcagaagca
gtcaacacggcccacaacggacgtgtgaacggcctgtgcttcacagccgacgggctgtac
ttgctcaccacagggactgatgaccgcatgaggctgtggaacagcgccacaggagagaac
accctggtgaactacggcaaggtggccaacgccagccgcacttgtctgaggctaacggtg
tcacgtggctgcagcccagagtttgtatttgtgccatgcagcagttcggtggcggtctac
tcactacacacgggtgagctggtcactatgctgcggggtcactataacaacgtagactgc
tgccagtttcaccccgactatcaggaactgtatagcggaggcaaagactgcaacatccta
gcctgggttcctgtgttgaggcaacctgacattgaagttgaagagactgccactgccaag
ggtgagcaacagtctgcagtgaatcctgtttttgtagatgcctggagcagcgatgaggac
tga

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