Clupea harengus (Atlantic herring): 122131994
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Entry
122131994 CDS
T09045
Name
(RefSeq) MHC class II transactivator-like isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
char01001
]
122131994
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
char04054
]
122131994
Enzymes [BR:
char01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
122131994
Protein kinases [BR:
char01001
]
Serine/threonine kinases: Other
TAF1 family
122131994
Pattern recognition receptors [BR:
char04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
122131994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
AAA_25
nSTAND3
LRR_4
nSTAND_NTPase5
AAA_22
ABC_tran
MeaB
AAA_24
NPHP3_N
RNA_helicase
VapE-like_dom
LRR_NXF1-5
AAA_19
MMR_HSR1
TsaE
Motif
Other DBs
NCBI-GeneID:
122131994
NCBI-ProteinID:
XP_042562668
UniProt:
A0A8M1KJY8
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MKTFLKILAYQIIQTHVLNPAKPGYRIPPAEPTYIFVAVPTTPRKQMPQIVPLSPVSGTV
APELLLISPGSSLSDSSNRTTTPEPAALSSPTTAPGSVSPPEFLAMSPGSPLSERSNGTT
PGVPGSPLSERSNGTTPGVPGSPLSERSNGTTPGVPGSPLSERSNGTTPGVPGSPLSERS
NGTTPGEPVTVSSPTIEGSTCESADIATNPQPEQVEEEPVCVASYLQHVKSCMRESCGEL
EKDRSMESHYVDVHLLQRKVQVKSGKNANKCLEKEMVFLSEAERRKATLTRKQVFNDGQM
RKKQVITLLGKPGTGKSTFIKRLCLDWAKGGLPRFRYVFSLNCKTFNLTQPDYSLRRLLF
DLPTSLHCEDPEAVFKHVVSTPKEVLIIFDSFEDFKDHEGLLHSPATCAKAGGFSIKQLF
SGLFLKRLLKGCTLFISTRPSGVLTPLLRKVDSILELRGFSPVEIDLYASRYFTDVPRGA
SALTKMKLQKYVYSLCSNPLLCRYTCFLLDYHLDNRHYALPSTLTGLALRVLSLCLKLTS
QTQDQETPDISRLCTLAWDFLSTHNCLATDEQLGSTDLRDYGLATEILASHTVGSSDSTG
ETISYSFAHALIQNLLASLHLVLSDNVNDKALVSQTMGTSRRRRPQGEWLAMVQQFTMGL
LFQNCKLQVSSILHTTTSTASTAKKKAMESHVESLKAGEMAPGKLLELCHCVYETSSKKL
MKHLVKNLPDTISLCGAQLTPPDVYVFWHLLQNTKALKRQFCIDVQDTGITLCGLKELVG
LDCVTSYRAPLADTIAMWEELQQSGETDLLGSAMNKLTLHPFKATQEDHINNLALLIQIH
RDRNLPHRYSASLEHNIPAVRQLEKLDFELGPNTGPVIFPKLALIIPTLGSLIHLDLEKN
MIGNSGAELLADVLNSLSSLKMLNLSQNSIGDRGLEKLAPALAATPSLQGLSLYNNLIGE
GGAERLALVLPEMRSLIDLDVGFNNFANVGAQKLSDSLKCCPWMKSLGLWNASITYGKLQ
HLHQLDKRIRIQHL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacctttttgaaaatcttagcctatcagatcatccagacccatgtgctaaaccct
gctaaaccaggatacaggatacctccagcagaacccacttacatctttgttgcagtaccc
accacgcctcggaagcagatgccacaaattgttcccctctcccccgtcagtggcactgtt
gcccctgagctcctgctgatcagcccagggagctccttatcagacagcagtaacagaacc
acaaccccagaacctgccgccctctcatctcctactacagctcctggctcagtgtctcct
ccagagttcctggctatgagtcccgggagcccattatcagaacgtagtaacggaaccaca
cctggggtacctgggagcccattatcagaacgtagtaacggaaccacacctggggtacct
gggagcccattatcagaacgtagtaacggaaccacacctggggtacctgggagcccatta
tcagaacgtagtaacggaaccacacctggggtacctgggagcccattatcagaacgtagt
aacggaaccacacctggggaacctgtcactgtctcgtctcctacaatagaggggagcact
tgtgaatcagctgatattgccacaaatccccaacctgagcaggttgaagaggagcctgtg
tgtgttgcgagctacctgcagcatgtgaagtcatgcatgagagaatcctgcggggagctc
gagaaggacaggagcatggagtcccactatgttgatgtccatctgcttcagaggaaagta
caggtgaagtccgggaagaacgccaacaagtgcctcgagaaagagatggtcttcctcagt
gaggcggagcggaggaaggccacactgaccaggaagcaagtgttcaacgacggccagatg
aggaagaagcaggtgatcacactcctggggaaacctgggacgggcaagagcacgtttatt
aaacggctctgcctcgactgggccaagggaggcctgccgcggttccgctacgtcttctcg
ctaaactgcaagactttcaatctgacacagcccgactacagtctgaggaggctgctcttt
gatctacctacgtctcttcactgcgaagacccggaggccgtgttcaaacacgtggtttcc
actcccaaagaggttctcattattttcgacagcttcgaggacttcaaagaccacgagggg
ctccttcactcccccgccacctgcgccaaggcagggggcttcagcatcaagcagctgttc
tcaggcctcttcctaaagcgccttctaaaagggtgcacacttttcatttccacgagaccc
agtggtgtcttaaccccgctgctacgcaaagtggacagcattttggagcttcgcggcttc
tctcccgtggagatcgacctatacgcctcgcgatattttacggacgtgccgcgcggtgcc
agcgccctgactaaaatgaagctccaaaagtatgtttacagcttgtgctccaatcctctg
ctgtgccggtacacgtgctttctgctggactaccacttggacaacaggcattacgccttg
ccctcgaccctcacgggtctggcactgagagtgctctccctgtgccttaagctaacctcg
caaacgcaagaccaggagacgccagatatttcccggctgtgcacactggcatgggatttc
ctcagcacccacaactgcctcgcgacggacgagcaactgggatccacggacctcagggat
tatgggcttgccaccgaaatactcgcttctcataccgtgggtagctctgacagcacgggt
gagacgataagctactcttttgctcatgccctcatccaaaacctcctggcctctttgcac
ctggtcttgtcagacaatgtgaacgacaaggcgctggtcagccagaccatggggaccagc
aggaggaggaggcctcagggggaatggctggccatggtgcagcagttcaccatggggctc
ctcttccagaactgcaagctccaagtgagcagcatcttacacaccaccaccagcacagcc
agcacggccaagaaaaaggccatggagtcccacgtagagtccctcaaggctggggagatg
gctccggggaagttgctggagctgtgccactgcgtgtacgaaacgagcagcaagaagctg
atgaagcacctggtgaagaacctcccagacaccataagtctctgcggagctcagctgact
cccccagacgtgtacgtcttctggcacctactgcagaacaccaaagcactcaagaggcag
ttctgcattgacgtgcaggacacaggcatcaccctctgtggtctgaaagagcttgtcggg
ctggactgtgtcacctcctacagggcacccttggcagacaccattgccatgtgggaagag
ctgcagcaaagtggtgagacagacctcctggggagtgctatgaacaagctcacccttcac
ccattcaaggcaacacaggaagaccacatcaacaacctggctctactcattcagatccac
cgagacagaaacttgccacacagatattctgcatcactggaacacaatataccagctgtc
aggcaactcgagaagcttgattttgagctgggtcccaacactggccctgtgatctttcca
aagctcgccctcatcatacccactcttggaagcctgattcatttagaccttgagaaaaac
atgataggcaactcaggggcagagttgctggctgatgttttgaattctttatcatcgctg
aaaatgctgaatctgtctcagaactcaatcggagatagggggctagagaagcttgcaccg
gctctcgctgccacgccctctcttcaaggtctcagtctgtacaataacctgattggggaa
ggtggagcggagagacttgctttggtcctaccagagatgcggtccctgatagaccttgat
gtgggctttaacaacttcgctaatgtcggggcgcagaagctgagcgacagcctgaaatgt
tgtccttggatgaagtctcttgggctgtggaacgcttccataacgtacggcaaactccag
catctgcaccaactggataaaaggataaggattcaacacctttag
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