Clupea harengus (Atlantic herring): 122132072
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Entry
122132072 CDS
T09045
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
122132072
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122132072
Spliceosome [BR:
char03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122132072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
HA2_N
AAA_19
Ank_2
AAA_22
nSTAND3
ATPase
Ank
AAA_16
PhoH
SRP54
AAA_7
AAA_30
Motif
Other DBs
NCBI-GeneID:
122132072
NCBI-ProteinID:
XP_042562770
UniProt:
A0A8M1KJM6
LinkDB
All DBs
Position
Unknown
AA seq
1076 aa
AA seq
DB search
MSRPSTGAPKTGMSQNRQSGSSRGKGLKDIRIDEEVKIAVHLSLERFQYGDQKEMEFPSS
LTSTERAFIHRFAQSLGYISKSRGKGSNRFLTIRKKDGSESTQSIMTFSLTPCSKQVVRN
LLQRFPMTNKEITDLLPRTERGMSVAMEAGDNGRDKNRTSGRLNNGIPQVPPRRGQSELD
HFRCSLPVYGRQEEIVQIIKDNRVILVLGETGSGKTTQIPQFLLDDCNRNGIPCRIFCTQ
PRRLAAIAVAERVAAERGENIGQTIGYQIRLESRVSPKTLLTFCTSGVLLRTLMAGDATL
STVTHVIVDEVHERDGLSDFLLTKMRDLLQKMPTLKLILSSAALDIDLFVRYFGTCPVIH
IKGRPFEVKELFLEDILRTTGYANKDMLKYKKEMQKVEKQQTSLTEWCKVREGGSRQEPQ
RDKMATCILQENDLLDDGGDGVFSQLNEKDVASLDPWLLKEMDACISDIFLNEDHDAFVQ
LFNLILSENVSVDYRHSETSATPLMVAAARGFISQVEQLLSMGASVTLKASNGWTALGWA
KHFIQAEVVDLLETYISTLEAGKLDESSLVQSDSAELSAEDQELLKVYHHSFDDEKVDLD
LVIHLLFNICQTSPDDGAVLIFLPGYDEIVSLRDRILYDDKRFADQPQRYQVFTLHSNMQ
TADQKKVLKNAPVGVRKIILSTNIAETSITVNDVVFVIDAGKVKEKSFDALNHVTMLKMV
WISKASALQRKGRAGRCRPGICFHLFSHLRFDNMLEHQVPQLLRMPLQELCLHTKLLAPV
NCPIAEFLSRAPEPPHTLSVKNAVQMLKTIDAMDPWEDLTELGYHLADLPVEPHLGKMVL
CGVVLKCLDPILTIACTLAHRDPFVLPGQASQKRAAMLCRKRFTAGTFSDHMALLRAFQA
WQKARSDGWERTFCEKNFLSQATMEIIIGMRTQLLGQLRAIGFVRARGGGDIRDVNLNSE
NWGVVKAALVAGMYPNLLHVDRESNALMGTKEKRVRFHPTSILSQPQFKKIPPVNGQMAA
VQALPTDWLIYDEMTRAHRIASVRCCSTVTPLTVGIFGGCAKLPSSALQEPTVQRG
NT seq
3230 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgaccaagcactggcgcccccaaaacaggcatgtcccaaaacagacagtctggc
tcttccaggggcaagggactgaaagacattcgcatcgatgaagaagttaaaatagcggtg
cacctttctctggagcgatttcagtacggggaccaaaaagaaatggaatttccttcttcc
ttgaccagcactgagagggcattcatacatcgctttgcccagtcactgggatatatctca
aaaagccgcggaaaggggtcaaacagattccttacaatcaggaagaaggatggatctgaa
tcgacccagtccatcatgacctttagtcttaccccctgttccaaacaggtggtcaggaac
cttcttcagagatttcctatgacaaataaagagatcacagacctgctaccgcgcactgaa
cgagggatgtctgttgctatggaagcaggtgataatggtcgtgacaagaacaggacgagc
gggcggttaaacaacggcatacctcaggtcccccccaggagaggccagtcggagctggac
cactttcgctgctcactgcccgtgtacggacgccaggaggagattgtgcagatcatcaag
gacaaccgtgtcattctggttttgggtgaaaccgggtccggtaaaaccactcagattcct
cagttcctgctggatgactgcaatcgaaacgggatcccctgtcgcatcttttgcactcag
ccccggcgcctggcagccattgctgtggcagagcgggtggccgcggagcgaggagagaac
atcggacagaccatcggttaccagatccgcctggagagcagagtctctcccaagactctc
ttgacgttctgcaccagtggggtcctgttacggaccctgatggcaggggatgctacgctc
tcaacagtcacgcatgtcatagtggacgaggtccacgaacgagacggcctgagtgacttt
ctcctgacgaagatgcgggacctgttgcagaagatgcccaccctgaagctcatcctctcc
agcgccgctctggacatcgatctctttgtgcgctactttggcacctgccccgtcattcac
attaaaggaaggccattcgaagtcaaagagcttttcctggaggacattttacggactact
ggctatgcaaacaaagacatgctgaagtacaaaaaggaaatgcaaaaggtggagaagcag
cagacctcgctgacggagtggtgtaaggtacgtgagggggggtccaggcaggagccccag
agagacaagatggccacctgcatcctccaggagaacgacctgctagatgacggaggggat
ggcgtcttcagccagctgaatgagaaagacgtggcatccctagacccctggttactgaag
gagatggatgcctgcatctccgacatcttcctgaatgaagaccatgacgctttcgtccaa
ctcttcaatctcatcctgagtgagaacgtcagtgtggactacaggcacagtgagacgagt
gccacccctctgatggtggcagcggcgcggggcttcatcagtcaggtggagcagctactc
agcatgggggccagcgtcaccctcaaggcctccaacggatggactgctcttggctgggcc
aagcatttcattcaggctgaggttgtggacctactggagacatacatctccaccctggag
gcgggtaagctcgatgagtcatccctggtgcagtcagacagtgcggagctgagcgcggag
gaccaggagcttcttaaggtgtaccaccacagctttgacgatgagaaggtggatctggac
ctcgtcatacacctgctcttcaacatctgtcagacgagcccagacgacggtgccgttttg
atcttcttgccaggatatgatgagattgtcagcctaagggaccgcatcctctacgatgat
aagagatttgctgaccagccgcaaaggtatcaggtgttcacgctacattccaacatgcag
accgccgaccagaagaaggtgctgaagaacgcacctgttggtgttcggaaaattatcctg
tcaacgaacatcgctgagaccagcatcacagtcaacgatgtggtgtttgttattgatgcc
ggaaaagttaaagagaagtcctttgatgccctgaatcacgtgaccatgctgaagatggtg
tggatctctaaagccagtgctctgcaaaggaagggcagagcagggcgttgcagacctggc
atctgcttccacctgttcagtcacctgcgcttcgataacatgctggaacaccaggtgccc
cagctactaaggatgcctctgcaggaactatgcctacacactaagctgttggcccccgtc
aactgtcccatagccgagttcctctccagagcccccgagcccccacacaccctcagtgtt
aaaaacgctgtgcagatgctcaagacgatcgacgccatggacccctgggaggacctgaca
gagctgggctaccacctggccgacctccccgtggagccccacctaggcaagatggtgctg
tgcggggtggtgctcaagtgcctggaccccatcctgaccatcgcctgcacgctggcgcac
cgtgacccctttgtgctgcccggccaggcctcccagaagagggccgctatgctgtgccgc
aagcgcttcaccgccggcacgttcagtgaccacatggccctgctgagggcgtttcaggca
tggcagaaagcccgtagtgatggctgggaacgcaccttctgtgagaagaacttcctgtct
caggccaccatggagatcatcattggcatgaggacccagctcctggggcagctcagggcg
ataggttttgtgcgcgcccgcggtggtggggacatccgggacgtgaacctgaactctgag
aactggggggtggtgaaggcagcgctggtggcgggcatgtaccccaacctgctgcacgtg
gaccgcgagagcaacgccctcatgggcaccaaggagaagagggtccgcttccatcccacc
tccatcctcagtcagccgcagttcaagaagatacctccagtcaatggacagatggcagca
gtgcaggctctgcccactgattggctgatttatgatgagatgacccgcgcccacaggatc
gccagcgtgcgctgctgctcgaccgtcaccccgctgacggtgggcatctttgggggctgc
gccaagctacccagctccgccctgcaggaacccacggtgcagagaggtag
DBGET
integrated database retrieval system
