Clupea harengus (Atlantic herring): 122132099
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Entry
122132099 CDS
T09045
Name
(RefSeq) embryonic polyadenylate-binding protein-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03015
mRNA surveillance pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122132099
09123 Folding, sorting and degradation
03018 RNA degradation
122132099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
122132099
03041 Spliceosome [BR:
char03041
]
122132099
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122132099
mRNA cycle factors
Stress granule specific factors
122132099
Spliceosome [BR:
char03041
]
Complex C
Other components
Complex C specific factors
122132099
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_MUD2_C
RRM_5
RBD_DEAH11
RRM_occluded
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
122132099
NCBI-ProteinID:
XP_042562809
UniProt:
A0A8M1KM33
LinkDB
All DBs
Position
Unknown
AA seq
653 aa
AA seq
DB search
MNTAPAYPLASLYVGDLHPDVTESMLYQKFSPAGPIMSIRVCRDVITRRSLGYAYINFQQ
PADAECALDTMNYEVLKGRPMRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSA
FGNILSCKVVCDERGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVQEAGKEMETDSAD
PSIANRKLHSLWKNCQLSTISFVGHFKSRKEREAECGAKAMVYTNVYIKNFGETYDDEQL
MIIFSEFGKTLSVRVMRDERGNSRGFGFVNYENHEDAQKAVEAMNGKELNGRILYVGRAQ
KRLERQGELKRKFEQIKMDRIQRYQGVNLYVKNLDDSINDERLRKEFAPYGTITSAKVMT
DGGHSKGFGFVCFTSPEEATRAVTEMNGRIISTKPLYVALAQRKDERKAILTNQYMQRLA
SVRTMPGALVTNYQQPPYYIPTMPQPPGRHPYNAGVRFGPRWTTQPPRPQALYAAQYVTT
RRASTPISSVQQASTQAPRVAKNTTLRMANIGTQTAGRRAVAGAVSRGVSQYKYSSGVRN
VQQVIPVPLSHVNQQVPNIPVMEPAVHVRGQEPLTASMLAAAPLMEQKQLLGERLYPLIY
ALHPNLAGKITGMLLEIDNSELLHMLESPESLHSKVTHILRWTCFLIKYSSYV
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgaacactgcaccagcttatcccctggcctccctgtacgtgggggatcttcatcctgat
gttactgagtctatgctgtaccagaaattttcacctgctggaccaatcatgtccattcgt
gtatgccgtgatgtcattactcgcaggtctttaggatatgcctacattaactttcagcag
cctgcagatgcggaatgcgctcttgatacaatgaactatgaggtcctcaagggtcgtcca
atgagaatcatgtggtcacaacgtgatccaggtcttaggaagtctggtgttgggaatatc
ttcatcaagaacatggatgagtctattgacaataaagcactttatgacaccttctctgca
tttggaaatatcctgtcctgcaaggttgtgtgtgatgagcgtggctccaaaggctatggc
tttgtgcactttgagacacaagaggctgccaaccgtgccattgagaccatgaatggcatg
ctgctgaatgatcgcaaagtacaagaggcaggtaaagaaatggagacagacagtgcagat
ccaagcattgcaaaccgaaagctccattccctgtggaaaaattgtcagctgtcgacaatt
agttttgtaggccattttaaatcccgcaaagaacgtgaggcggagtgcggagcgaaggct
atggtctacactaatgtttacatcaagaactttggagaaacttatgacgatgagcaactt
atgataatcttctcagagtttgggaaaacactgagtgttcgtgtgatgcgtgatgagcga
ggtaactcccgtggctttggctttgtgaactatgagaaccatgaggatgctcagaaggct
gtggaggcgatgaatgggaaggagctgaatgggcggatcctgtatgtgggccgtgctcag
aagaggctggagcggcagggggagctcaagcgcaagtttgagcagatcaagatggatcgc
atccagcgctatcagggggttaatctctatgtgaagaacctagacgatagcatcaacgat
gagcgactgaggaaggagtttgctccctatggcaccatcactagcgccaaggtgatgact
gacggcggccacagcaagggcttcggatttgtctgtttcacctcaccggaggaggcaacc
cgcgccgtcacggagatgaacggccgcatcatcagcaccaagccgctctacgtggcatta
gctcagcggaaggatgagcggaaggccatcctcaccaaccagtacatgcagcggctggcc
agcgtcaggaccatgcccggagccctggtgaccaactaccagcaacctccctactacatc
cccaccatgcctcagcccccaggccgtcatccatacaatgctggtgtccgctttggccca
agatggactactcagcctcccagaccacaggcgctctacgctgctcagtacgtgacgacc
cgccgggcctccacccccatcagcagtgtccagcaggcctctacacaggcgccgcgcgtg
gccaaaaacaccacgctaaggatggccaacattggtacccagactgcaggaagacgagca
gtcgctggggctgtgagtcgtggggtcagccagtacaaatactccagtggagtccgcaac
gtccagcaggtgatccctgtgcctttatcccatgtgaaccagcaggttccaaacatccct
gtgatggagccagcagttcatgtgaggggacaggaacctctcacagcctctatgctggca
gcagctccactcatggagcagaaacagctgctgggtgagcgactgtaccctctgatctac
gccctgcaccccaacctggcggggaagatcacaggcatgctgctggagatagacaactct
gagctgctccacatgttggagtctcccgagtctctgcactccaaggtaacacacattttg
aggtggacatgttttttaatcaagtacagctcatatgtatag
DBGET
integrated database retrieval system
