Clupea harengus (Atlantic herring): 122132224
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Entry
122132224 CDS
T09045
Name
(RefSeq) E3 ubiquitin-protein ligase DTX4-like
KO
K06058
deltex [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
122132224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
122132224
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122132224
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122132224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DTC
WWE
zf-C3HC4
zf-RING_11
zf-RING_2
zf-RING_UBOX
zf-rbx1
PHD_NSD
zf_RING_Vps8
zf-ANAPC11
zf-UDP
PHD
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
122132224
NCBI-ProteinID:
XP_042562987
UniProt:
A0A8M1KGG9
LinkDB
All DBs
Position
Unknown
AA seq
659 aa
AA seq
DB search
MEVGIAIQAARDRNQPWLDLAPLGFCYLIDFQSMTQINRQTQRHRRIQRRSDMAYPLVSG
PLPKSSQGGWATSGTGGGRGGGEATTGGGDSGGTGAGLGVGGSTGMLLGVGVSGLTSSSG
GNSGGSSSNGSVVYPSSTVSMSSLASLGQPCACQQCMLVMSVKANAVAASYTLGRKPSQS
KPSLSPKVTARGTSGSTGTNSNSYSHTLPHPLSYASSARTLSPRVSAAAFAHSISLLTSG
TATLSLSNRPPPPPLPPPQPPPAANQQQPPGMPSTPGLPHSTSSSPSVPTATLITTATAT
TSSSSSLPSPAVPAQRSAACAAPLPARASLAGLSRPALQRIAMAQSRALIASGVPTVPVK
NLNGSSPVHPALAGITGILMSAAALPVCLTRPPKLVLHPPPVSKSDIKPIPGLGHCCRKT
SKKQARKGKTPEEVVKRYLQKVRSPPEEDCTICMEVLLGPSGYKGPGVGGISRGESVGRL
AQCGHQYHIQCLVAMYNNGNKDGSLQCPTCKTIYGVKTGNQPPGKMEYHVIPHSLPGHPD
CKTIRIIYNIPPGLQGPEHPSPGKAFTARGFPRHCYLPDSEKGRKVLRLLLVAWDRRLIF
SVGTSSTTGESDTVIWNEVHHKTEFGSNLTGHGYPDPGYLDNVLEELKAQGITDDEIQQ
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcggcatcgccatccaggcagctcgggaccgcaaccaaccctggctggacctg
gcgccgctggggttttgctacctcattgatttccagagcatgacgcagataaaccggcag
actcaacggcacagacgcatccaacggcgctcagacatggcctaccctctagtgtctggc
ccgctccccaaatcgagccaggggggctgggccacctcgggcacagggggagggcgtgga
ggaggcgaagctacaacaggaggtggggatagcgggggtacaggggcagggcttggagtt
gggggctcgaccgggatgctcttaggtgttggggtgtctggtctaacctcatccagtgga
ggaaacagtggcggcagtagcagtaatgggagtgttgtgtaccccagcagtacagtctcc
atgtcctctctagcatcactgggtcagccgtgtgcctgtcagcaatgtatgcttgtcatg
agtgtcaaagccaatgctgtggctgcttcgtacactctgggccgcaagccctcgcagtcc
aaaccttccctgagccccaaagttacagccagaggtacctctggttcaactggtactaac
tcgaactcgtactctcacactctgccacacccactgtcgtacgcgtcctcagcgaggact
ctctccccacgcgtaagtgctgccgcctttgcccactcgatctccctgctcacctctggc
actgccacgctgtctctctccaaccgcccgcctcccccgcctctgcccccgcctcagccg
ccaccagcagccaatcagcagcagcctccaggcatgccctccacacctggcctcccccat
tctacctcctcctcgccatctgtgccaactgccacacttatcaccacagcgaccgccacc
acctcttcatcctcatccctgccttcacctgccgtgcccgcacagcgctctgccgcctgt
gctgcaccactgccagcccgtgccagcttggcaggcctcagccgtcctgccctgcaacgc
attgctatggcacagtcgcgggcccttattgcctcaggggtgcccacggtgccagtgaag
aacctgaacggctccagcccagtgcacccggcgctggcgggcatcacggggatcctgatg
agcgccgcagcactgcccgtctgcctcacgcgcccgcctaagctggtgctgcacccgccg
cccgtcagcaagagtgacatcaagcctatccccggcctcggccactgctgccgcaagacc
agcaagaagcaagctcgcaagggcaagactccagaggaggtggtgaagcgctatctgcag
aaggtccgcagtcccccagaggaggactgcaccatctgcatggaggttctcttgggcccc
tccggctacaaaggccctggggtgggtggcatctcgcggggtgagtccgtggggcgtctg
gcccagtgtgggcaccagtaccatatccagtgcttggtggccatgtacaacaatggcaat
aaagatggcagcctccagtgccccacatgtaagaccatctacggggtgaagacgggaaac
cagccacccggcaagatggaataccatgtcatcccccactccctgcctgggcaccccgac
tgcaagaccatccgcatcatctacaacatccctccaggcctgcagggacctgagcaccca
agcccaggcaaagccttcactgccagaggcttccctcgtcactgctatctccctgacagc
gagaaagggcgcaaggtgctgcggctactgctggtggcgtgggacaggcgcctgatcttc
tctgtgggaacatccagcaccaccggcgagtcggacaccgtcatctggaacgaggtccac
cacaagaccgagttcggctccaacctcacaggccacgggtaccctgaccccggctacctg
gacaatgttctggaggagctgaaggcccagggtatcacggacgacgagatacagcagtga
DBGET
integrated database retrieval system
