Clupea harengus (Atlantic herring): 122132314
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Entry
122132314 CDS
T09045
Symbol
trim24
Name
(RefSeq) transcription intermediary factor 1-alpha isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
char01001
]
122132314 (trim24)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
122132314 (trim24)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122132314 (trim24)
Protein kinases [BR:
char01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
122132314 (trim24)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
122132314 (trim24)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-C3HC4
zf-RING_5
PRANC
Motif
Other DBs
NCBI-GeneID:
122132314
NCBI-ProteinID:
XP_042563049
UniProt:
A0A8M1KMU5
LinkDB
All DBs
Position
Unknown
AA seq
1232 aa
AA seq
DB search
MDESAEKVEPDDIVIIVENEAESMPVQEESEKAQSTHSLMDCCPICKLNFHSREPKLLPC
LHSFCKKCLPPPSRNFLYTSQMMANHQLQEDPSKPLNVIRCPVCHQECMEVEVLENFFVK
DSMEVPSSTVEKTSQLCMSCEDNTEATGYCVECVEFLCVTCIEAHQRVKFTRDHTIRQKE
EMSPEGVGVSTQKPVFCDVHKQEPLKLFCETCDRLTCRDCQLSKHKDHNYQFLDDAYRNH
REHLENMTRQLQDKRKAIEEVSNAINNGLHQVDENRKAVTTEIKKSICNLIMEINRKGKI
LVNQLEALTKDHESALKKQQEDVTSLSKHLDHVISFTKWATAINSGTALLYCKRLILCQI
QYLMRAKCSASYVPQSTVRFQCRSSFWASNVDLGSLVMEKIPGHQPGGMQMFPNHPSHPN
HPGHPGHPNHPSHPSHPNHPGPRPEGPAGVFPGGPAQQRQSTLAQLQMQVEKLAQHPSRH
PPPNHWSWYHNMRLPGVPPPRPMQGGSPSQVPPNMAQQGRRYGAPQPNTRSPTTMLQNAG
FPPQTLRGMISSPSSSNFPPKPMDVLQGASRYAQNAPPSGGGHLTTQPSLHQRNVMDLVH
LNRRPEPPGPMSLSMQRPGFPHTAPSTATDRNAQSHQSSPMLTANSGSEGKTGTVSWKRS
EPQQNGPSTSSAKRRRRSSPGPIIVIKDEPEDDDEVRFVQSSVKASLPDSTGVQSQTPRQ
ESPPGEEQPTEKPDERTPEPDEDPNEDWCAVCQNGGELLCCDKCPKVFHLSCHIPALKSS
PRYPEHPGEWFCSFCRDLTAPEMVYDTGDSQKTVKEEPDSEGLTPVDKRKCERLLLRLYC
NELSTDFQDPASPSTMPEYNEIIKTPMDLSVVRTKLDVKQNPSYKRPDDFVADIRLIFKN
CAKFHKEDNEMASVGVNLENFFEEQLKGLYPEQPFPGVKEEGAASSAPEEERPSDVCEEH
GAPVEAETVESPSPKSPSPPSLPSDEVSEPPTEVRQDEPQDADVQEDSAKDAEVQEDSLK
EADAQEDSAKDPDVQEDSAKAADVQEDSHMDAEGQEDSHMDAEVQEDSPKDADVQEDSHM
DAEGQEDSPKDADAQEDSPKEAEGQEDSAKDADVQEDSAMDADVQEDSAMDADVQEDSAK
DPDVQEDSPKDPEGQEDSAKDPDVQEDSAKDPDVQEDSAKEADVQEDSAKEAELQEDSPK
DAEVQEKSPKDADVQKDLPKEAEETRPKRMKR
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atggacgagagtgcagaaaaagtggagcctgacgatattgttattattgtcgaaaatgaa
gccgaaagcatgccagttcaagaggaaagcgaaaaggctcaaagtacccacagtttaatg
gactgttgtcccatttgcaagttgaattttcatagcagagagcccaagctgctaccctgt
ctccactctttctgtaagaaatgcttgccaccgccgtcaaggaacttcttatatacgagc
caaatgatggccaaccatcaacttcaggaagatccatcaaaacctctcaacgtgattcgt
tgtccagtttgccatcaggaatgcatggaagtggaagttttagagaacttctttgtgaaa
gactcaatggaagtgccaagcagcacagtggagaagacgagtcagttgtgtatgagttgt
gaggacaacacagaggccacaggctattgtgtggaatgtgtggagtttctctgtgtcact
tgcattgaagctcatcagcgggtgaagtttactcgagaccacaccattcgacagaaagaa
gaaatgtcaccagaaggagtgggagtgtccacccagaagcctgttttctgtgatgtccac
aaacaggagcctttgaaacttttctgtgaaacatgcgatcgtctgacgtgtcgggactgt
cagttatccaaacacaaggatcacaattaccagtttctagacgatgcttatagaaatcac
cgggagcacctggagaacatgactcgccagctccaggataagagaaaagccatcgaggaa
gtgtccaacgcaatcaataatggtctccatcaggtggatgagaaccgaaaggctgtcacc
actgagatcaagaagtccatttgcaatctgattatggagattaatagaaaagggaaaata
ctggtgaatcaacttgaggctctcaccaaggaccatgagtcggcactcaagaaacagcag
gaggatgtcacctccctctctaaacacctggatcatgtgatctccttcaccaagtgggca
acagccatcaacagtggcactgctctcctctattgcaagagactgattctatgtcaaatc
cagtacctcatgcgggcgaagtgcagtgcctcatatgttccccagagcacagtgcggttc
cagtgtcgctcaagcttctgggcctcaaatgttgatctaggctctctggtcatggagaaa
attccaggacatcaaccaggtgggatgcagatgttccctaaccatcccagccaccccaac
catcccggtcatcccggccaccccaatcatcccagccatcccagccaccccaaccatcca
ggtccaaggcctgaaggacccgctggggtctttcctggtgggccagctcaacaacggcag
agtacactggcacagctccagatgcaggtggagaagctagcccagcaccccagccgccac
ccgccaccaaaccattggtcctggtaccacaacatgcgcctgccaggagtccccccaccg
aggcccatgcagggggggtctccttcccaagtacctcctaacatggctcagcagggccga
cggtatggtgctcctcaaccaaacacccgcagtcctacaaccatgctgcagaacgcagga
tttcccccgcaaactctgagaggaatgatcagctcccccagctcctccaacttcccaccc
aaacccatggatgtgctgcagggtgcgtctcgatatgcccaaaatgcgcctccttctggt
ggaggacaccttaccacgcaaccctcgctccatcagagaaatgtcatggaccttgtacac
ttaaacagaagacctgagcctcctgggcccatgtccttgtccatgcaaagacctggtttc
ccccatacggccccatccaccgctactgataggaatgcacaatctcatcagagctccccc
atgttaactgcaaactcaggctctgaagggaagacagggactgtttcttggaaacgctca
gagccccagcagaacggaccctccacctcctctgctaagagaagacgaaggtcatcccct
gggcccatcattgttatcaaggatgagcctgaggatgatgatgaggttcgctttgtgcag
tccagtgtgaaggctagtttgccagacagcactggtgtccagtcacagacgcctcgtcag
gagtctcccccaggcgaagagcagccgaccgagaagcccgacgagagaaccccagagcct
gacgaggaccccaacgaggactggtgtgctgtgtgtcagaatggaggagaactgctctgt
tgtgacaagtgtccaaaggtcttccatctcagctgccatattcctgccctcaagtcttct
ccgaggtaccctgaacatcctggtgaatggttttgttcattctgccgagacctgactgca
cctgaaatggtgtatgacactggagacagtcagaaaaccgtaaaagaggagccagattct
gaaggactaactcctgtagataaaaggaaatgtgagaggttattacttcgcctctactgc
aatgagctcagcactgacttccaagacccagcctcaccgtcgacaatgcctgaatataat
gagattataaaaactcccatggacctctcagttgtgaggaccaagcttgacgtgaagcag
aacccatcctacaagaggcccgatgactttgtcgcagacattagactgatctttaaaaac
tgtgccaagtttcacaaggaggacaatgagatggctagtgtcggcgttaacctggagaac
ttcttcgaggagcagctgaagggcctgtatcctgagcagccttttcctggggtgaaggaa
gaaggcgctgcctcttcggccccagaggaagaaaggccctcagatgtctgtgaagaacat
ggagcacctgttgaagctgagactgttgagagtccatctccaaagagtccatcaccacct
agcctccccagtgacgaggtgtccgaaccgcccacagaagtccgtcaggatgagcctcag
gatgctgatgtccaagaagactcggccaaggatgctgaggtccaggaagactcgctcaaa
gaggctgatgcccaagaagactcggccaaggatcctgatgtccaagaagactcggccaag
gctgctgatgtccaagaagactcgcacatggatgctgaaggccaagaagactcacacatg
gatgctgaggtccaggaagactcgcccaaggatgctgatgtccaagaagactcacacatg
gatgctgaaggccaagaagactcacccaaggatgctgatgcccaagaagactcacccaag
gaggctgaaggccaagaagactcggccaaggatgctgatgtccaagaagactcggccatg
gatgctgatgtccaagaagactcggccatggatgctgatgtccaagaagactcggccaag
gatcctgatgtccaggaagactcacccaaggatcctgaaggccaagaagactcggccaag
gatcctgatgtccaagaagactcggccaaggatcctgatgtccaagaagactcggccaag
gaggctgatgtccaagaagactcggccaaggaggctgagctccaggaagactcgcccaaa
gatgctgaggtccaagaaaagtcacccaaggatgctgatgtccagaaagacttacccaag
gaggctgaagagactcggccaaagaggatgaaaagatga
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integrated database retrieval system
