Clupea harengus (Atlantic herring): 122132373
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Entry
122132373 CDS
T09045
Name
(RefSeq) LOW QUALITY PROTEIN: tenascin-like
KO
K06252
tenascin
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04510
Focal adhesion
char04512
ECM-receptor interaction
char04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122132373
04518 Integrin signaling
122132373
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122132373
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
char00536
]
122132373
Glycosaminoglycan binding proteins [BR:
char00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122132373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_TEN
fn3
EGF_Teneurin
EGF_2
EGF_Tenascin
DUF7949
EGF
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_Dep-1_3rd
hEGF
fn3_2
Lzipper-MIP1
Motif
Other DBs
NCBI-GeneID:
122132373
NCBI-ProteinID:
XP_042563085
UniProt:
A0A8M1KKI7
LinkDB
All DBs
Position
Unknown
AA seq
1109 aa
AA seq
DB search
MGMRGLLLGFATVALLLQFCHAGLLKKVIRHRRETLSPSSSENVSLPSPEQPVVFNHVYN
INVPASALCSVDLESPGGGEEVKPQTAALSDMHAEHTVDGENQIVFTHRINIPRQACACD
NHLPDLKDLLKRLEMLEAEVSSLREQCSSGTSCCGAQVTGEITTRPYCSGHGNYSTEICS
CVCEPGWRGVNCSESECPNDCQDQGRCVDGRCECFEGYSGDDCSLELCRTDCGDYGECIE
GSCVCEDGFIGLDCSQTNCPSNCLGRGRCVEDECVCDEPWTGFDCSXLICPNDCYDRGRC
NNGTCECDEGFTGEDCGELTCLNNCNNRGMCLNGKCVCHAGYSGEDCSKLTCPGDCHQRG
HCFNGRCICDPGFEGEDCRILSCLDNCNNRGQCVNGECFCDVGWEGSDCSDRSCLNNCMN
LGHCVNGKCVCKQGYTGEDCSTKMCPNNCHGRGECVDGKCICHAGYTGKDCNELTCPNDC
NNRGRCVNGQCICNRGFTGEDCTEKTCPNNCLDRGYCVDGKCVCFEGYAGADCSVLTCPG
DCTDQGHCLNGICICDMGYTGDDCSQITAPKDLTVVEVDSETVDVSWMNEMLVTEYLVTY
VPTAPGGLELDMRVSGDKKMATIRELEPGIEYLISVYAVLNNKMSLPVSARVATHLPQPE
GLKFKSVRETSVEVEWDPLNIPFDSWNLIFRNTKEENGEILNALSPPETTFEQSGLGPGQ
EYEVKLQVVKNNTRGPPATKELLTKIDSPSQVGVRDVTDTSALLTWFQPVSQVDGVSVFY
GPSLDSDRTTVELSSSDTQHHLSDLHPDTEYEVGLMAKRGEITSMPVYETFLTDLDAPTD
LQVLEQTDDSITLEWRNSRAKVLTYRVKYGPLSGGEHGERLFPTGHQDTTQAILTGLRPG
TEYGMGVTAVKDERESLPTTTNAVTDLDAPKDLEVSEATETTLLLVWRKPSAKIDIYRLV
FVSADGRRAEVEVPGGANTHTLVNLTPGMMYTITLVAERARRKSAPATVTAPTDMQKPQV
GSVTVSDVSWDSFLVSWTLERGVFDSFLIEVKSEGGEETHNLTVSGDVYSQAITGLLPDT
LYRVILYGFHRGALLEPVFAEATTGTHVQ
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggggatgcgaggcctgcttctgggctttgccacagtggccctcctgctccagttctgt
cacgccggcctgctgaagaaggtcatccggcaccggcgagagaccctcagtcccagctcc
agcgagaacgtgagcctgccgagtcccgagcagcccgtggtcttcaaccacgtctacaac
atcaacgtccctgccagcgccctgtgctccgtggacttggagtcccccggaggaggagag
gaagtcaagccccagaccgcggccctctccgacatgcacgccgagcacaccgtcgacggc
gagaaccaaatcgtcttcacccaccgcatcaacatccccaggcaggcttgtgcctgcgac
aaccacctgcccgacctgaaggacctcctgaagcggctggagatgctggaggcggaagtc
tccagcctgagggagcagtgctccagcggaacgagctgctgcggagctcaggtgacagga
gagataacaaccaggccctactgcagcgggcatggcaactacagcacggagatctgcagc
tgcgtgtgcgagcctggctggaggggtgtcaactgctcggagtccgagtgccccaatgac
tgccaggatcagggccgctgtgtcgacggaaggtgcgaatgcttcgagggatactccggc
gacgactgcagcctcgagctttgcagaacggactgcggagattacggcgagtgcatcgag
ggctcctgcgtttgcgaagatggcttcatcggcctcgactgctcccagaccaactgccca
agcaactgtctgggcaggggccgctgtgtcgaggatgagtgcgtgtgcgacgaaccctgg
accggcttcgactgctccngactcatctgccccaacgactgctatgaccgcggccgctgc
aacaacggaacttgcgaatgcgatgagggcttcactggcgaggactgcggcgagctcacg
tgcctgaacaactgcaacaaccggggcatgtgtttgaatggtaagtgcgtatgccacgct
ggatacagtggagaggactgttccaagctcacgtgccccggagactgtcaccagaggggc
cactgcttcaacggaaggtgcatctgtgatcctggcttcgagggagaagactgcagaatc
ctttcctgcctcgataactgtaacaacagaggccagtgtgtcaacggggagtgcttttgc
gatgtcggatgggagggctccgactgctccgaccgttcttgcctaaacaactgcatgaac
ctcggccactgtgtcaacggcaagtgtgtgtgcaagcagggctacaccggtgaggactgt
agcaccaagatgtgccccaacaactgccacggccgcggggaatgtgtggacggcaaatgc
atctgccatgctggctacacaggcaaagactgcaatgagctgacctgtccgaatgactgt
aacaaccgtggacgctgtgtgaacggccagtgcatctgcaaccgaggatttaccggagaa
gactgcactgagaagacgtgcccgaacaactgcttggaccgtgggtactgcgtggatggc
aagtgtgtctgcttcgagggctacgctggagccgactgctctgtgctcacctgtcccggc
gactgcactgaccaaggccactgcctgaatggaatctgcatctgcgacatgggatacacc
ggcgacgactgctctcagatcaccgcgcccaaggacctgactgtggtagaggttgactca
gaaaccgtggacgtgtcctggatgaacgagatgctggtgacggagtacctcgtcacctac
gtgcccactgcgcctggaggtctggagttggacatgcgcgtgtcgggagacaaaaagatg
gccaccatccgagagctggagcccggtatcgagtacctcatcagcgtttacgccgtcctc
aacaacaagatgagcttgcccgtcagcgccagagtagccacacatcttccccagccagag
ggcttgaagtttaaatcagtgagggagacctccgtggaggtggagtgggaccccctcaat
atccccttcgatagctggaacctcatcttcaggaacacgaaagaggagaatggagagatc
ctgaatgcgctgagcccgcccgagaccacctttgagcagtccggcctgggaccgggccag
gagtacgaagtcaagctgcaggtggtgaagaacaacacccgcggaccccctgcaaccaaa
gaacttctcacaaagatcgactcccccagccaggttggcgtgcgcgacgtgaccgacacc
tctgccctgctcacctggttccagcccgtgtctcaggtggacggcgtgtccgtcttctac
gggcccagcctggactccgaccgcaccaccgtggagctctcctcctccgacacccagcac
cacctgagcgacctgcaccccgacacagagtacgaggtcggcctcatggccaagcgtggc
gagatcaccagcatgcccgtctatgagactttcctcacagatctggacgccccgacagac
ctgcaggtgttggagcagacggacgacagcatcaccctggagtggaggaacagccgggcc
aaggtgctcacctaccgggtgaagtacggccccctgtccgggggagagcacggggagagg
ctcttccccaccgggcaccaggacaccacccaggccatactcacgggcttgaggccggga
accgagtacgggatgggggtgaccgcagtcaaggatgaacgcgagagcttgcccacaaca
actaacgccgtgactgatctcgatgctccgaaggacctggaggtcagtgaggccactgag
accacgctgcttctggtctggaggaaaccgtcggccaagatcgacatctacagactggtg
ttcgtgtccgccgacggccgacgggccgaggtggaggtgcccggcggcgccaacacccac
acgctggtcaacctcacccctggcatgatgtacaccatcaccttggtggcagagagagcc
aggagaaagagcgccccggccaccgtcaccgcccccacagacatgcagaagccccaagtg
ggtagtgtcactgtctccgacgtgtcgtgggacagcttcctggtgtcctggactttggaa
cggggcgtctttgacagctttctgatcgaggttaagtccgagggcggtgaggagacgcac
aacctcaccgtgtcgggcgacgtgtacagccaggccatcacaggcctgctccctgacacc
ctgtacagggtcatcctctatggcttccataggggcgccctcctagagcctgtctttgcc
gaggccactacaggtacacacgttcagtga
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