Cardinium endosymbiont cEper1 of Encarsia pergandiella: CAHE_0799
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Entry
CAHE_0799 CDS
T02243
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
che
Cardinium endosymbiont cEper1 of Encarsia pergandiella
Pathway
che03030
DNA replication
che03410
Base excision repair
che03420
Nucleotide excision repair
che03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
che00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAHE_0799 (ligA)
03410 Base excision repair
CAHE_0799 (ligA)
03420 Nucleotide excision repair
CAHE_0799 (ligA)
03430 Mismatch repair
CAHE_0799 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
che03032
]
CAHE_0799 (ligA)
03400 DNA repair and recombination proteins [BR:
che03400
]
CAHE_0799 (ligA)
Enzymes [BR:
che01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CAHE_0799 (ligA)
DNA replication proteins [BR:
che03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CAHE_0799 (ligA)
DNA repair and recombination proteins [BR:
che03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CAHE_0799 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CAHE_0799 (ligA)
MMR (mismatch excision repair)
DNA ligase
CAHE_0799 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CAHE_0799 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
BRCT_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
CCM10576
UniProt:
K0P6T5
LinkDB
All DBs
Position
complement(838661..840661)
Genome browser
AA seq
666 aa
AA seq
DB search
MEPSDISKEIKRLIDLIRYYNECYFQKGISEISDYGYDQLLERLTRLEEAHPHLKWPNSP
TEVVGERLSKGFEVVYHQTPMLSLAKTYSEIEVVQFVERAKKMFPNATIDFICEPKIDGV
ALSILYEKGRLVRVVTRGDGEKGDDVTRHVAQCLPLPQNIQNPPCDAFEVRGEAFMSKAV
FKALNSARKAKGEPLWANPRNITAGTLKALDVEGVKARQLAFYGYGFYGPSYTCPTQQAA
LALLSALGFSVPPTYKVCHNSVEIMAYIRYCAQYKKDLPVEVDGVVIKVNKLAQQDRMGR
TSKSPRWAIAYKYQPERAHSTLQRVTFQLGRTGIVTPVAHFSPVPLAGTTVRRASLYNAD
ELARRDLYLGDTIFIEKGGEIIPKVVGIDRARRHTDGQPVRFICSCPACGTLLHRAAGCV
AYYCPNKQGCLPQLKGALLHFAHRKAMDIDALGPKTVDTLLEAKLVQTAADLYRLRYDAV
NGLAGFQALSTQRLLANIQGSKTRPFDRVLFALGIQHVGETVARKLALHFRSMERLQGAT
EAELLQLPDIGEKIVQSILDYLKDPYQQTILNGLQAAGVQFILPEPVDTLLPFSSKNFVI
SGTFQKFTRAECTKLIEAAGGRVLPAISSKVDYLVAGTKVGPSKLTKAMAWGIPILEEDE
LIKMMA
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggagccatctgatatcagtaaggagatcaaacgtttgatagacttaattcggtactac
aatgaatgttatttccaaaaggggatttctgaaatttctgattatggatatgaccaatta
ttggaacggttaacgcggttggaggaggcccatcctcatttaaaatggcctaactctcca
actgaggtggttggagaacgactttcaaagggttttgaagtggtgtatcaccagacgcct
atgctctctttggctaaaacctattcagaaatagaggtggtgcaatttgtggaaagggca
aaaaaaatgtttccaaatgcgacgatagattttatatgtgaacctaaaatagatggtgtg
gcactaagcatcctttatgaaaaggggagattggtacgtgtggtgacacggggtgatggt
gaaaagggcgatgatgtcacacgccatgtggcccaatgtttgcccttgccccaaaatatt
caaaatccgccatgtgacgcatttgaggtccgtggcgaggcctttatgtccaaggcagtt
tttaaagcattaaatagtgcacgaaaggcaaaaggtgaacctttgtgggccaatcctcgt
aatattacagcgggtacattaaaggcgttggatgtagagggggttaaagcgcgtcagctg
gcattttatgggtatggtttttatgggccatcttatacttgtcctacgcaacaagcggcg
ttggcattactgtctgcgttgggtttttctgtgccacctacttataaggtatgtcataat
agtgtggaaatcatggcgtatattcgttattgtgcgcaatataaaaaggatttaccggtt
gaggtggatggagtggtgatcaaggtaaataagctggctcaacaagatagaatgggtaga
acttctaagtcgccgcgctgggctattgcctataaatatcaaccagaaagggcacattct
accctacaaagggtaacctttcagctaggcagaacgggaatagtgacaccagttgcgcat
tttagtcccgttccattggcaggtactacggtccgtcgtgcttcattgtacaatgcagat
gagttggctaggcgtgatctttatttgggcgatacgatttttattgaaaaaggtggggag
attattcctaaggtcgtggggatagatagggcgcgtcgccatactgatggccagcctgtt
cgctttatctgttcttgtcctgcttgtgggacactactccaccgggcagcagggtgcgtt
gcctactactgccccaataagcagggctgtttgccccaattaaaaggtgctttactccat
tttgcccatcggaaagcgatggatattgatgccttaggccctaaaacggttgatacttta
ttggaggctaaattggtccaaacggcagcagatctttacagattgcgttatgatgcggtc
aatggcttagcgggctttcaagcgctatccacgcaaagattattggctaatattcaaggc
tccaaaacaaggccttttgatagggtattgtttgctttgggtattcagcatgtaggggaa
acggtagctaggaaactagcgctacactttaggtctatggaacggttgcaaggggccact
gaagcggagctattacagctaccagatattggagagaagattgtgcagagtatactggat
tacctgaaggatccttaccaacaaaccattcttaatgggctacaagctgcgggggtgcag
tttatcttgccggagcctgttgatactttgttgccattttcttcaaaaaactttgttata
tcgggtacttttcaaaaatttacaagggcagaatgtactaaattaatagaagcagcaggc
ggaagggtgttgcctgctatttctagtaaagtggattacttggtagcaggcactaaagtt
ggtccatccaagttgacaaaggccatggcatggggcattccgattttagaagaagatgag
cttataaagatgatggcatga
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integrated database retrieval system
