Chelatococcus sp. CO-6: AL346_01780
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Entry
AL346_01780 CDS
T04040
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chel
Chelatococcus sp. CO-6
Pathway
chel03030
DNA replication
chel03410
Base excision repair
chel03420
Nucleotide excision repair
chel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AL346_01780
03410 Base excision repair
AL346_01780
03420 Nucleotide excision repair
AL346_01780
03430 Mismatch repair
AL346_01780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chel03032
]
AL346_01780
03400 DNA repair and recombination proteins [BR:
chel03400
]
AL346_01780
Enzymes [BR:
chel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AL346_01780
DNA replication proteins [BR:
chel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AL346_01780
DNA repair and recombination proteins [BR:
chel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AL346_01780
NER (nucleotide excision repair)
GGR (global genome repair) factors
AL346_01780
MMR (mismatch excision repair)
DNA ligase
AL346_01780
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AL346_01780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
DUF3701
HALZ
HHH
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ALA16367
LinkDB
All DBs
Position
complement(337781..339973)
Genome browser
AA seq
730 aa
AA seq
DB search
MSATPMSERSSSSTAGASLRDVAVEVLTPREAKREHAMLATEIAEHDRRYFGEDAPTISD
ADYDALRRRYEALEARFPDLATDESLTKKVGTRPSEKFAKVRHRVPMLSLSNAFADEDVA
EFVVRIRRFLGLAPDAPLAITAEPKIDGLSISLRYEKGRLVTAATRGDGEEGEDVTANAR
VVDAIPKEIDAADMPEVFEVRGEVYMRHVDFAAINERQAEAGKPLFANPRNAAAGSLRQL
DPAVTMRRPLAFFAYAWGDVSALPADTQMGVVEALGRWGFPVNPLMKRCDGVEDLLARYH
AIEADRANLGYDIDGVVYKVDSLALQQRLGFVSRSPRWAIAHKFPAERAMTELIDIEIQV
GRTGAMTPVAKLKPVTVGGVVVANATLHNEDYIRGIGGDGQPIRGGIDIRIGDTVEIQRA
GDVIPQVLSVVMDKRPAGSEPYRFPTTCPACGSHAVREINPRTGREDAVRRCTGGLTCPA
QAMERLKHFVSRNALDIDGLGDKQIELFFREGLVHGPQDIFTLAERDATGLKKLKDREGF
GETSVRNLFAAIEARRQVPLNRFVFALGIRHVGETTAKLLARHYGTFEALRAALIAARDQ
ASEAWAELNAIDGIGEVVAEALVQFFAEPHNETTLDALLAQVTPQEMERTATIESPVAGK
TVVFTGTLVRMSRDEAKAMAERYGAKVAGSVSKKTDLVVAGPGAGSKLAKAQEFGVEVID
EDGWFTLVGA
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgacgcccatgtccgaacgttcttcgtcctccacagcgggtgcttccctgcgc
gacgtcgccgtcgaggtattgacgccgcgggaggcgaagcgcgagcacgcgatgctcgct
accgagatcgccgagcacgaccgccgctatttcggcgaggatgcacctaccatctccgat
gccgactacgacgccctgcggcgccgctatgaggcgctggaggcacgctttcccgacctc
gccaccgacgagagcctgacgaagaaggtcggcacccggccgagcgagaaattcgccaag
gtgcgccatcgcgtgcccatgctgtcgctgtcgaatgccttcgccgacgaggacgtcgcg
gaattcgtcgtgcgcatccgccgcttcctgggcctcgcccccgacgcgccgctcgccatc
acggccgagccgaagatcgacggcctgtccatcagcctgcgctacgagaagggccgcctc
gtcacggccgcgacgcgcggcgacggtgaggagggggaggacgtgacggcgaatgcccgc
gtcgtcgacgccatccccaaggagatcgacgccgccgacatgcccgaggtgttcgaggtg
cgcggcgaggtctacatgcgccatgtggatttcgcggcgatcaacgaacgccaggccgag
gccggcaagccgctcttcgccaatccgcgcaatgccgctgccggttcgctgcgccagctc
gaccccgccgtcaccatgcggcggccgctcgccttcttcgcctatgcctggggcgacgtg
tcggccctgccggccgacacgcagatgggggtggtcgaggcgctggggcgctggggcttt
cccgtcaacccgctgatgaagcgctgcgacggcgtcgaggatctgctcgcccgttatcac
gccatcgaggccgaccgggccaatctcggctacgacatcgacggcgtcgtctacaaggtc
gacagcctcgccctgcagcagcgcctcggcttcgtctcgcgctcgccgcgctgggccatc
gcccacaagtttccggccgagcgggcgatgacggaactcatcgacatcgagatccaggtg
ggccgcaccggtgccatgacgccggtggcgaagctgaagcccgtcacggtgggcggcgtc
gtcgtcgccaacgcgacgctgcacaacgaggactacatccgcggcatcggcggcgacggc
cagccgatccgcggcggcatcgacatccgcatcggcgacacggtcgagatccagcgcgcc
ggcgacgtcatcccgcaggtgctcagcgtcgtcatggacaagcgcccggccggctccgag
ccctaccgcttcccgaccacgtgcccggcctgcggcagccatgcggtgcgcgagatcaac
ccccgcacggggcgggaggacgcggtgcggcgctgcacgggcgggctcacctgcccggcg
caggccatggagcggctgaagcatttcgtgtcgcgcaacgcgctcgacatcgacggcctc
ggcgacaagcagatcgagctcttcttccgcgaggggctggtgcacggcccgcaggacatc
ttcaccctggccgagcgcgacgcgacgggcctgaagaagctgaaggaccgcgagggcttc
ggcgagacgagcgtgcgcaacctcttcgccgccatcgaggcgcgccggcaggtgccgctc
aaccgcttcgtcttcgcgctcggcatccgccacgtgggcgagacgaccgcgaagctcctc
gcccgccactacggcaccttcgaggcgctgcgcgcagccctgatcgccgcccgcgaccaa
gcctcggaagcctgggcggagctcaacgccatcgacggcatcggcgaggtggtggcggag
gcgctggtgcagttcttcgccgagccgcacaacgagacgacgctcgatgcgctgcttgcg
caagtgacgccgcaggagatggagcggacggcgaccatcgagagccccgtcgcgggcaag
acggtggtcttcaccggcacgctcgtgcgcatgtcgcgcgacgaggccaaggccatggcc
gagcgctacggcgccaaggtggcgggctccgtatcgaagaagaccgacctcgtggtggct
gggccgggggccggttccaagctcgccaaggcgcaggagttcggtgtcgaggtcatcgac
gaggacggctggttcacgctggtgggggcgtga
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