Candidatus Cardinium hertigii: DK880_00906
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Entry
DK880_00906 CDS
T05479
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cher
Candidatus Cardinium hertigii
Pathway
cher03030
DNA replication
cher03410
Base excision repair
cher03420
Nucleotide excision repair
cher03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cher00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DK880_00906 (ligA)
03410 Base excision repair
DK880_00906 (ligA)
03420 Nucleotide excision repair
DK880_00906 (ligA)
03430 Mismatch repair
DK880_00906 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cher03032
]
DK880_00906 (ligA)
03400 DNA repair and recombination proteins [BR:
cher03400
]
DK880_00906 (ligA)
Enzymes [BR:
cher01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DK880_00906 (ligA)
DNA replication proteins [BR:
cher03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DK880_00906 (ligA)
DNA repair and recombination proteins [BR:
cher03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DK880_00906 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DK880_00906 (ligA)
MMR (mismatch excision repair)
DNA ligase
DK880_00906 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DK880_00906 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
RNA_ligase
Auto_anti-p27
Proteasome
Motif
Other DBs
NCBI-ProteinID:
AWN82204
UniProt:
A0A2Z3LIC7
LinkDB
All DBs
Position
1074977..1077004
Genome browser
AA seq
675 aa
AA seq
DB search
MQASDKAIINEIKALTDLIRHHNFCYFQKNAAEISDYAYDQLVERLVQLEKTYPHFKEPN
SPTETIGEKPSYRSPLVHHPLPMLSLAKTYSEAEIVQFVARVKKIAPDLSISFVCEPKID
GVALCIRYESGKLVAIVTRGDGTAGDDITQRALQCMQLPTVIEDAPLASFEVRGEAFMSK
ASFKAFNDKRKKEGKPLWANPRNITAGTLNALDIDLVEGRQLAFYGYSLYTPKPFLATHQ
EALAWLAKWGFSTLPIYKVCKDVSAIMTYIHYWAEHKNELPVGIDGIVIKVNEFDQQQLL
GATAKAPRWAIAYKYQPETAHSTLENITFQVGRSGVVTPVAHFKPVVLAGTYVSRASLYN
AEELARRAFHVGDTILIEKGGDIIPKIVGINLAHRKAAQQPILFPQSCPACATPLYRAAG
EAIYYCPNKQRCLPQLKGLLLHFVQRRAMAIDAIGPKTIDALWEAKLVQTAADLYKLRYE
DVIQLAGFQALSARKLLANIQSSKARPFDRVLFALGIKHVGDTLAKTLALHFACMERLQQ
APLSELLAIPTIGATIAQHIVAYFQDPDQQALLADLQSAGLQFSLQQQAIAELPLSAKKI
VISGTFHYFTREALMYCIEQAGATLVTSISAKVDYVIAGQKAGPAKLAKAKALAIPILGE
QDFMNLIRYESLSCI
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcatctgataaagcaatcattaatgaaattaaagctttaaccgatttgattagg
caccataatttttgttattttcagaaaaatgcagctgagatttcagattatgcttatgat
caattggtagagaggttagtacaactggagaagacttaccctcattttaaagaaccgaat
tctccaacagaaacaattggcgaaaagccttcctatcgatctccattggtgcaccatcca
cttcccatgctttccctagctaaaacttactcagaagcggaaatcgttcaatttgttgca
agggtaaaaaaaatagcaccagacttatctataagttttgtatgtgaacccaaaatagat
ggtgtagcattgtgcatacggtatgaaagcggtaagttggtagctatagtcacacggggg
gatggcaccgcaggcgatgatattacccagcgtgcactccaatgtatgcagctacctact
gtaattgaggatgctccccttgcttcatttgaagtacgtggggaagcatttatgtccaaa
gcttcctttaaagccttcaatgataagcgaaaaaaagaaggcaaaccattatgggcgaat
cctcgaaacattacggcgggtacgctcaatgctttagatatagatctagtggagggacgt
caattggcattttatggttatagtttatatacacctaaaccattccttgctacccatcag
gaagcccttgcatggcttgccaagtggggtttctctacacttcctatttataaagtatgc
aaagatgtatcagctataatgacctatatccattattgggctgaacacaaaaatgagtta
cctgttggcatagatggtattgttattaaggttaatgagttcgatcaacaacaattgcta
ggtgctaccgccaaagcaccccgttgggctattgcttataaatatcaaccagaaacggct
cattctaccctggaaaatattacttttcaagtaggtaggagtggggtagttacgcctgtg
gcccattttaaacctgttgtattggcagggacctatgtaagtcgagcttccttatacaat
gcagaggagcttgctagaagggcattccacgtaggggataccattttaattgagaaaggg
ggcgatattattcctaaaatcgtagggataaatcttgcgcatcgcaaggcagcacagcaa
cctatcctatttcctcaatcctgtcctgcgtgtgccacgccgctctatcgagcagcagga
gaagccatttattattgtcccaataagcagcgctgtttgcctcagctgaaaggtctccta
ttgcattttgtgcagcgcagagcaatggcgattgatgccataggacctaaaacaattgat
gcattatgggaggccaagctagtgcaaacagcagcagatctttataagttgcgttatgaa
gatgttatccagttagcaggttttcaagcgctatctgcacgtaaacttttagctaacatt
caatcttccaaagcaagaccctttgatagggtattgtttgcattaggtattaagcatgtg
ggagataccctagctaagacattagcccttcattttgcgtgcatggagcgtttgcagcaa
gctcccctatcagaactgctagcgataccaaccattggagcaactattgcgcaacatata
gtagcctactttcaggatcccgatcaacaagcattactagctgatttacaatcagcaggt
ttgcaattttctttacaacaacaagctatagcagagctcccgctatcagcaaagaaaatt
gtcatttcaggtacgttccactattttacacgggaagcattgatgtattgtatcgaacaa
gcaggtgctactttggtaacttctatttctgctaaagtagattatgtaatagcaggacaa
aaggctggcccagcaaaattagccaaagcaaaagcgttagctatccctattttaggggag
caggattttatgaatttaattcgttatgagtctttatcttgcatttaa
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