Corynebacterium hesseae: R3O64_05705
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Entry
R3O64_05705 CDS
T10652
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ches Corynebacterium hesseae
Pathway
ches03030
DNA replication
ches03410
Base excision repair
ches03420
Nucleotide excision repair
ches03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ches00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R3O64_05705 (ligA)
03410 Base excision repair
R3O64_05705 (ligA)
03420 Nucleotide excision repair
R3O64_05705 (ligA)
03430 Mismatch repair
R3O64_05705 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ches03032
]
R3O64_05705 (ligA)
03400 DNA repair and recombination proteins [BR:
ches03400
]
R3O64_05705 (ligA)
Enzymes [BR:
ches01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R3O64_05705 (ligA)
DNA replication proteins [BR:
ches03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R3O64_05705 (ligA)
DNA repair and recombination proteins [BR:
ches03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R3O64_05705 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R3O64_05705 (ligA)
MMR (mismatch excision repair)
DNA ligase
R3O64_05705 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R3O64_05705 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
DZR_2
HMBD
Motif
Other DBs
NCBI-ProteinID:
WXX39850
LinkDB
All DBs
Position
1221332..1223356
Genome browser
AA seq
674 aa
AA seq
DB search
MSDAVDIQREWSELAQEVRKHRELYYNGEPAIPDADFDALFQRLLALEAEHPELQTPDSP
TQQVGAAPEGAVDIEHLERLYSLDNVFSADELQDWLDRTPAKAYLTELKIDGLSIDLVYR
DGKLATAATRGDGRVGEDITANARVIPDIPRELTGSEEYPVPSLVEVRGEVYMRPDEFEE
INSARREDGKPTFANPRNAAAGGLRMKDPEDVKKRRLHMVCHGIGAREGFQPASQHDAYQ
ALEAWGFPVSPYTQRVTTAKEVQERVTYWEEHRHDAYFEMDGLVIKVDDLASQRSLGATS
RAPRWAIAYKYPPEEVTTKLLNIEVGVGRTGRVTPFAIMEPVFVSGSTVSMATLHNQFEV
KNKNVLIGDTIVIRKAGEIIPEVLGPVLDKRDGSETEWVFPENCPACGTKLAPQKEGDQD
WRCPNTRSCPAQLAARLEYLASRKALDIGELGEKAAADLISSGVLVDEAELFDLDEDALL
KSSVYTTQKGALNASGKKLLENLKSARQAEFWRVLVALSIRHVGPIAARALATRFGSMEA
LRAASVEELADTDGVGGIIAESFKQWFEVDWHDNIVQKWTAAGVTMEEESSDKPAQTMEG
ITVVVTGTLENYSRDSAKEAIISRGGKASGSVSKKTNYVVVGENAGSKEQKARDLGLTIL
DEEGFNRLLETGEA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgatgcagtagatatccaacgcgaatggtccgagcttgcccaggaagtgcgcaag
caccgcgagctgtactacaacggcgagccggcgatcccggatgcggactttgacgccctt
ttccagcgcttgctggcgctggaagcggaacacccggagcttcaaactccggattcgcct
acccagcaggtgggcgctgccccggagggcgccgttgacatcgagcacctggaacgcctg
tacagtttggacaacgtttttagcgctgacgagttgcaggactggctggaccgcaccccg
gcaaaggcctatctcaccgagctcaagattgacggtttgtccatcgatttggtctatcgt
gacggcaagcttgccacggccgccacgcgtggtgatggtcgcgtgggtgaggacatcact
gctaatgcgcgtgttattcccgatatcccacgtgagctgacgggcagcgaagaatacccg
gttccctccctggtagaggtccgcggcgaggtgtacatgcgcccggatgaatttgaggaa
attaactccgcacgccgcgaggatggtaagcccacctttgccaacccccgcaacgcggcc
gcgggcggactgcgcatgaaggacccggaggacgtcaagaagcgccggctccacatggtc
tgccacggcatcggcgcgcgcgaaggattccaaccagcctcgcaacacgacgcctaccag
gccttggaggcatggggattcccggtgtcgccttatacccagcgggtcaccaccgccaag
gaggttcaagagcgcgtgacctactgggaggaacaccgccacgatgcttacttcgagatg
gacggtctcgtcatcaaggtcgatgacctggccagccagcgctccttaggcgcgacctca
cgtgcgccacgttgggccatcgcgtataagtacccaccggaggaggtcaccaccaagctg
ctcaacattgaggtcggtgtcggtcgaacgggacgcgtgacgcctttcgccatcatggaa
ccagtctttgtctccggctcgacggtttccatggccaccctgcacaaccagttcgaggtc
aagaacaagaacgtcctcatcggggacaccattgtcatccgcaaggccggagagatcatc
cctgaggttctcggccccgtcctagacaagcgcgatggcagcgagaccgaatgggtcttc
ccggagaactgccctgcatgcggcacgaagctggcaccgcagaaggaaggcgaccaggac
tggcgctgcccgaatacccgcagctgcccagcgcagctggcggcgcgtctggagtatttg
gcctcccgcaaggcgctcgacattggtgagctgggggagaaggctgctgcggatctgatt
tcctccggagtgctcgtggacgaggcggagctctttgatctcgatgaagacgcactcctc
aagtcctcggtctacaccacccagaagggcgcgctcaacgcctcgggcaagaagctgctg
gagaacctcaagtccgcccgccaggctgagttctggcgagtgctcgtagcgctgtccatc
cggcacgttggccccattgccgcacgtgcgttagccacgcggtttggctccatggaggcg
ctgcgcgcagcatcggtggaggagctggcggataccgatggcgtgggcggcatcatcgcg
gaatcctttaagcaatggtttgaggtggactggcacgacaacatcgtgcagaagtggacc
gccgccggggtgaccatggaggaagaatccagcgataagcccgcgcaaacgatggaggga
atcaccgtggtggtgaccggaaccctagagaactacagtcgcgattccgctaaggaagcc
atcatatcccgtggcggcaaggcctccgggtcggtgtcgaagaagaccaactatgtcgtc
gtcggagaaaacgccggttcaaaggaacagaaggcccgcgaccttggcttgaccattttg
gatgaggaaggcttcaaccgcctccttgaaacgggcgaggcatga
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