KEGG   Chryseobacterium glaciei: A0O34_03405
Entry
A0O34_03405       CDS       T04575                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
chh  Chryseobacterium glaciei
Pathway
chh03030  DNA replication
chh03410  Base excision repair
chh03420  Nucleotide excision repair
chh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:chh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A0O34_03405
   03410 Base excision repair
    A0O34_03405
   03420 Nucleotide excision repair
    A0O34_03405
   03430 Mismatch repair
    A0O34_03405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:chh03032]
    A0O34_03405
   03400 DNA repair and recombination proteins [BR:chh03400]
    A0O34_03405
Enzymes [BR:chh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A0O34_03405
DNA replication proteins [BR:chh03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A0O34_03405
DNA repair and recombination proteins [BR:chh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A0O34_03405
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A0O34_03405
   MMR (mismatch excision repair)
    DNA ligase
     A0O34_03405
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A0O34_03405
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH 5_3_exonuc RNA_ligase DUF7575
Other DBs
NCBI-ProteinID: ANF49647
UniProt: A0A172XRJ5
LinkDB
Position
770092..772098
AA seq 668 aa
MPENIQQKIEKLREELHQHNYNYYILDEATISDFEFDTQLKELQDLEAQHPEFNDDNSPT
LRVGGAVTKNFPTTQHKFRMYSLDNSYDFDDLEDWEKRIIKTIDDPVEFVAELKYDGASI
SILYENGKLVQAVTRGDGFQGDEITANVRTISDIPLTLKGDFPNQFFMRGEIYLTRKNFD
KLNKLREEEGLDPFMNPRNTASGSLKMQDSAEVRKRTLSSVLYQYISEEVPAETHWELLQ
KAQGWGFKTSQQAKLCSTMDEVKEFINFWDVERHNLPFEIDGIVLKVNSLQQQRQLGYTA
KSPRWAMAYKFKAEKVETELKSVAYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDII
KKLDLHENDFVYVEKGGEIIPKIVGINTEKRTSESKEIEYIKNCPECGTELVKIVDQAIH
FCPNELHCPPQVVGRMIHYVSRKALNIDNLGSETIEQLYREKLIENPADFYTLTKEQLLP
LERMAEKSAQNIITGIENSKEIPFEKVLYGIGIKHVGETVAKKLVKNFATIDDLKAATAE
ELCQVEDIGTKIAVSIVDFFANPENILMLERLKSYGVQLEKGENTNEVLSNVLDGKTFLF
TGKLSLFTRESAEDMVEKHGGKNISAVSKNLNFLVVGEKAGSKLKKAQDIGTIEILDEQQ
FLDLIEKQ
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgcctgaaaacattcaacaaaagatagaaaagctccgcgaagagctacatcagcataat
tacaattattacatccttgatgaagccaccatctcagattttgagtttgacacccaacta
aaagaacttcaggatcttgaagcgcaacatcctgaatttaatgacgataattcccctacc
ttacgtgttggcggagctgtaactaagaattttccgaccactcaacataaattcaggatg
tattctttggataattcttatgattttgacgatcttgaagattgggaaaaaagaatcatt
aaaacgattgatgatcctgtagaatttgtagcagaattaaaatatgatggtgcttcaatt
tcgattttatatgaaaacggaaagttggttcaggcagtaacgcgtggagacggttttcag
ggagatgaaatcacagcaaatgttagaacgatttcggatattcctttgaccttaaaagga
gatttcccgaatcagtttttcatgcgtggagagatttatttaacaaggaaaaacttcgat
aagcttaataaactgcgtgaggaagaaggtttagacccttttatgaatcctcgaaatacc
gcaagtggaagcttaaaaatgcaagacagcgcagaagtaagaaaacgtactctttcttct
gttttatatcaatatatttcggaagaagttcctgcagaaacgcattgggaactgcttcaa
aaagctcaaggatggggtttcaaaacttctcaacaggcaaaactttgttctacaatggat
gaagtgaaagaatttatcaatttctgggatgtagaacgtcataatttaccttttgaaatt
gatggaatcgttttaaaagtcaattcattacagcaacaaagacagcttggatacaccgca
aaatctccacgttgggcgatggcgtataaatttaaagctgaaaaagttgagaccgaatta
aaaagcgttgcttaccaagttggaagaaccggagcaattactcctgttgccaatttaaaa
cctgttttattggcgggaacgattgtaaaaagagcttctctacataatgaagatattatc
aaaaaactggatcttcatgaaaacgatttcgtgtatgtagaaaaaggaggtgaaattatt
cctaaaatcgtaggcataaacacagagaaaagaacttccgaaagcaaagagatcgaatac
attaaaaactgtcctgaatgtggaacagaattggtgaaaattgttgatcaggccattcat
ttttgtccgaatgagcttcattgtcctccacaggttgtgggaagaatgattcattacgtt
tcaagaaaagctttaaatatcgataatcttggaagcgaaaccattgaacaactttacaga
gaaaaattaatcgaaaatcctgctgatttttatactttaacaaaagagcaacttcttcca
ttggaaagaatggcggaaaaatctgctcagaatattatcacaggaatcgaaaattctaaa
gaaattccgtttgaaaaagtactgtatggaattggtataaaacacgtgggagaaacagtt
gcgaagaaattagtcaaaaatttcgctacgatcgatgacttaaaagcagcaaccgcagaa
gaactttgtcaggttgaagatatcggaacaaaaatcgcagtaagcatcgttgatttcttt
gcaaatcctgaaaatattttgatgcttgaacgtttgaaatcttacggcgttcagcttgaa
aaaggagaaaatacgaatgaagttttatctaatgttttggatggaaaaacttttcttttc
accggaaaattatctttattcacaagagaatccgcagaagatatggtagaaaaacacggc
ggaaaaaatatttcggcagtttccaaaaaccttaatttccttgttgtaggtgaaaaagcc
ggaagtaaattaaagaaagctcaagacatcggaacgattgaaattcttgatgaacagcag
tttttggatttgattgagaaacaatag

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