Colletotrichum higginsianum: CH63R_04159
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Entry
CH63R_04159 CDS
T08176
Name
(RefSeq) ATP dependent DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
chig
Colletotrichum higginsianum
Pathway
chig03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CH63R_04159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chig03400
]
CH63R_04159
Enzymes [BR:
chig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CH63R_04159
DNA repair and recombination proteins [BR:
chig03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CH63R_04159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
Motif
Other DBs
NCBI-GeneID:
28863241
NCBI-ProteinID:
XP_018160380
UniProt:
A0A1B7YIG3
LinkDB
All DBs
Position
3:complement(1990080..1993373)
Genome browser
AA seq
1013 aa
AA seq
DB search
MPLSFVLVCDLLEEARKHATSGNKNLNQRVSDWFTRHRRHVDDAGTDVSALLSTLLPDKR
TDRVYAIQTDTLSNIIGRALRLGASRVKELRRYKEPGRGEDLADCVARLLKETPNPMFAG
KNAVTVEEIDSVLNNLAASCRFSSPAVRALPPLSTSRDELLGSLYFRMQAREAKWLTRLI
LKNFQPVMLDPGHVYYCCDPLLPNILRVRDDFSAALSLLQDLRRLRREPSFRRGMGEKGE
ALMKHLTPVLGVKVGRPFWLKGRSIKHCIQLGHGRMSCEKKMDGEYCQIHVDLSKGFKCI
QIFSKSGKDSTNDRAALHGAIRDSLNIGRTNCKLARGCILEGELVVYSDKEQKILPFHKI
RKYVTRSGSFLHTEADSQRHDYEHLMIIYFDALLIDGESLLGVRQNERFERLTDLITCRK
GRAALVEHQIISFDHSLGPHHLRKAFAKSIAAREEGLVLKPDDPYFDFNKNHRPLSGCPI
KLKKEYIGGFGDVGDFAVVAARYDVDQAKCYSIPNLQWTHFYLGCLENKEDVQRCQAQPE
FTVVHQVELNETLLKMVVAYGNPLPVPFEDNDALILNIAPGIAQQKMPSMVFTEPLVFDV
RCFSFDKEGNTGFWQPRFPQVSKVHFDRSFIDTISFLELQSIAKDATTAPAMEDSQEMLD
WIARLEGADPRGIPVDAASQSTTTSLMTPSRDSSIRPSNSPAPSPAQSSLKSRRSLPALL
EAPESVLTTAPTTTSGTADIMADATGDSPTSEASQVPNKNKREPEGKDACPRKRARLRSE
PGPIAQGSPRSTRQPLADMSINQTTPSPHASQTQPPTAKQDEMDNKATKPVAPVSVELSK
KSMEDAMLIPESPAPSAPKPFAAAQKHVCQHAGDNCPFANTTVLLSSCIAQQAWITENLL
PIHGIREWTTDPQDWVGDPASSRSSPPDPNIQKRKRRPRKICFVEHNRKEATRALLMRLE
NSPQYTPSGRREYVEVYDWRILEDMTALEKVFKGSKPSAEHPDPKRKWWVGLA
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgcccctttcttttgttctcgtatgcgatctgctagaggaggctcgtaaacacgccaca
tccggcaacaagaacctcaaccaacgcgtgtccgactggttcacccggcaccgccgccat
gtcgacgacgctgggactgatgtctctgcactgctatctaccctccttccggacaagcgc
accgatcgagtgtatgcgatccagaccgatacgctgtctaacatcatcggccgagccctg
cgtcttggggcgtcgcgcgtcaaagagttgcgccgatataaagagcccggccgaggcgag
gatctggctgactgtgttgcgagactcctcaaagaaacaccgaaccctatgtttgccggg
aagaatgcggtaactgttgaggagatcgattcagtcctgaataacctcgccgcctcctgt
cgattcagctcacccgctgttcgagccttgccgcctctttcgaccagtcgggacgaactc
ctcggcagcctgtacttccgcatgcaagcgagagaagccaagtggctcacccgcctgatt
ctcaaaaacttccaacccgtcatgcttgacccgggacatgtgtactactgctgcgacccc
ctgctccctaatattttgagggtccgagacgacttttctgcagcactgtctcttctgcag
gatctgaggagactcaggagagaaccctcgtttcgcaggggcatgggggaaaagggggag
gcactgatgaagcacttgacacccgtcttgggcgtcaaagtcggcaggccattttggctg
aagggtcgtagtatcaaacattgcatccaactcggccacggtcgcatgagctgcgagaag
aagatggacggggagtactgtcagatccacgtagatttgagcaaaggattcaagtgcatc
cagatcttctccaagagcggcaaggacagcaccaacgaccgtgccgcgttgcatggagca
atccgagactctctgaacattggaaggaccaactgcaaactcgctcgtggttgtattctg
gagggggagttggtggtttacagtgacaaggagcagaaaatcttgccgtttcacaaaata
cgtaaatacgttacgaggtctggcagcttcctccacactgaggcagattcacagcgccac
gattatgaacaccttatgatcatctacttcgatgctctactcatcgacggagagtctctt
ctgggcgtccgccaaaacgagcgctttgaaagacttacagatctgattacctgtcgaaag
ggccgtgccgcgctggtagaacatcaaatcatcagcttcgaccattctcttgggccacat
catttgagaaaagcgtttgccaagtcgatcgcagcacgagaggaaggcctggtactgaag
cccgacgacccctatttcgacttcaacaagaaccaccgcccactttctggttgccccatc
aagctgaagaaggagtacattggcgggtttggtgatgtgggcgactttgctgtcgttgcg
gcgcggtacgacgtggaccaagcaaagtgctacagcatcccgaatctccagtggacgcac
ttctacctggggtgtctcgaaaacaaggaggatgtccagaggtgtcaggcccagcctgag
ttcacggtggttcaccaggtagagctcaacgagaccctgctcaagatggtggtggcatac
ggcaatccactgccagttccttttgaggacaatgacgccttgatccttaacattgcgcca
ggcattgcccaacaaaagatgcccagcatggtctttaccgaacctttggtgtttgatgtc
cgttgcttctcgtttgacaaggagggaaacacaggcttctggcagccaaggttcccgcag
gtgtccaaggtgcactttgaccggtcttttattgacaccatctccttcttggaactccag
tccattgccaaggacgcaactacagcaccggctatggaggacagtcaggagatgcttgac
tggattgctagactggaaggagccgatcctcggggaatccccgtcgacgccgccagtcag
tcaacgaccacatccttgatgaccccgtctcgggattcgtcaatccgaccgtcgaattcg
ccagctccatctcctgcacagagctcactgaaatcccgtagatctcttccggcgttgttg
gaagctccggagtccgttctcaccacagccccgacaactacatcaggtacagccgacatc
atggccgatgccactggagactctccgaccagcgaagcatcacaggttcccaacaaaaac
aaacgggaaccagagggaaaagacgcgtgtccgcgcaagcgtgcgaggcttcgctcggag
cctggtcccatcgcccaaggatccccccgatcaacgcgtcagcctctcgcagacatgagc
atcaaccaaacgaccccttctcctcacgcctctcaaacccagccgccgacggcgaagcag
gacgaaatggacaacaaagcgacgaagcccgtcgctcccgtctctgtcgaattgagcaag
aagtctatggaagatgccatgctaatccccgagtcgcccgctccgagcgcaccaaagccc
ttcgcggcagcgcaaaagcatgtatgccaacacgccggcgacaactgccccttcgccaac
accacagtactcctctcctcctgcatcgcccaacaggcctggatcacggaaaatctcctc
cccatccacggcatccgcgaatggacgacagacccgcaagactgggtcggcgatcccgcc
tcatcccgatcatcacccccggatccaaacatccagaagcgcaagcggcgtccccgcaag
atctgcttcgtcgagcacaatcgcaaagaagcgacccgcgctttgctgatgcgcctcgag
aacagcccgcagtacacgcccagcggcaggcgcgagtacgtcgaggtctacgactggcgg
attctggaggatatgactgctctggagaaggtcttcaaggggtcgaagccctcggccgag
cacccggaccccaaacgaaagtggtgggttggcttggcttag
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