Colletotrichum higginsianum: CH63R_05763
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Entry
CH63R_05763 CDS
T08176
Name
(RefSeq) Elongation factor Tu GTP binding domain-containing protein
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
chig
Colletotrichum higginsianum
Pathway
chig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CH63R_05763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
chig03041
]
CH63R_05763
Spliceosome [BR:
chig03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
CH63R_05763
Complex C
U5 SnRNP specific factors
CH63R_05763
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
EFG_C
EFG_III
GTP_EFTU_D2
EFL1
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
28864845
NCBI-ProteinID:
XP_018158588
UniProt:
A0A1B7YD69
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Position
4:complement(<1520300..>1523818)
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AA seq
982 aa
AA seq
DB search
MDDLYDEFGNFIGEDVGFEEASERGAEGDYVYGDDASEAPGATGQELMEIDDDGPSNAII
LHEDKQYYPTAQQVYGDEVEVLVREEDEQLLTQPIIAPVEQKKFNIEEVDLPPVFFERSF
MADLMNFPDQIRNVALAGHLHHGKTAFMDMLVLETHDITDRLERRVGKKRDEQLRYTDVH
VVERERGVSIKASPMSLVLPSSKGKSHLVNILDTPGHVNFVDEVATSLRLADGVCLVVDV
VEGVQVNTEQIIKHAVLEDIPLTLIINKMDRLILELKLPPKDAYFKLKHVIEEVNTVIEN
TIPGKGEAKRISPEKGNVLFACTDMGWCFTLQSFAKMYADTYGGINTEDFAKRLWGDVYF
NPEKRNFTRKPLETRSSRSFVNFVLEPIYKVFTHTISDSPEDLKVVLSGLGITLKPSQYK
ADAKVLLKLVCEQFFGPSTGFVDMIVSHIPSPDKSAERYLEKYYTGPLDTKVAQSVKICN
QDGPLVVHVTKLFSTADAKSFYSFGRVLSGTARPGMQVRVLGEGYSTDDDEDMAMATISD
VFIGESRYNIPTDGVPAGNYVLLGGVDNSIVKTATLVPPKLEDDEDPYIFKPVTHFTESV
LKVAVEPINPSELPKMLDGLRKIQKSYPLITTKVEESGEHIVLGTGELYMDCVLHDLRRL
YADMEIKVSDPVTRFCETVVEQSATKCYAITPNKKNKITMVAEQLDKGISEDIESGKVKI
RDPIRKTASYFEETYGWDKLAARSIWAFGPDEMGPNILQDDTLPSEVDKKLLATVKETIR
QGFSWATREGPLCEEPIRNTKFRITDVSLASEAIFRGGGQIIPTSRRACYSSFLMASPRL
MEPLYSVSVTGPEDSATEVYTTLARRRGHVLQDGPVAGTPLYRVNGLIPVIDSFGFETDL
RIKTKGMAMVSLTFDSWSIVPGDPLDKEVIIRPLQPASAQATARDFVLKTRRRKGLSEDV
SVATFLEPEFYQSLMESGALGD
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggatgacctatacgacgagtttggtaactttattggcgaggatgtcggcttcgaagag
gcatccgaaaggggagcggagggcgattacgtttacggcgacgacgccagtgaagcaccc
ggggctactggtcaggagttgatggaaattgacgatgatggcccatcgaatgcgatcatc
ctgcacgaagacaagcagtactacccgacggcgcaacaagtatacggagatgaggtcgaa
gtactggtacgagaggaggacgaacagctactcacacagccaattattgcgcccgttgag
caaaagaagttcaacattgaggaggtcgacctgccgccagtcttcttcgagcgaagcttc
atggcagaccttatgaacttccccgatcaaattcggaacgtcgcgctggcaggacatctc
catcacggaaagacggcgtttatggacatgctggtgttagagacccacgacatcaccgat
aggctcgagcgccgggtcggcaagaagagagacgagcagctcagatacaccgacgtacac
gttgtcgaaagagaaagaggtgtgtcaatcaaggcttcgccaatgagcttggtgttgccg
agctccaagggaaaatcccatttggtcaacattttggatacccccggccacgtcaacttt
gtcgacgaggtcgcgacgagcctgagattggccgacggcgtctgtttggttgttgacgtc
gtggagggcgttcaggtcaacaccgagcagattatcaagcacgcagttctggaggacata
ccgttgacactcatcatcaacaagatggatcgtctcatcttggagctcaagctgccgccc
aaggatgcgtacttcaagctcaagcatgtgattgaggaggtcaacaccgtcatcgaaaac
acaattccaggaaagggtgaggcaaagcggataagtcctgaaaagggcaacgtcctgttt
gcttgcacagacatgggatggtgcttcactctgcagtccttcgccaagatgtacgccgac
acctacggcggcatcaacacggaggactttgcaaagaggctgtggggagacgtctatttc
aaccccgagaagaggaactttacgcgcaagccactggaaactcgctcgagccgatcgttc
gtcaacttcgttctggaacccatctacaaggtcttcacacacaccattagtgacagccct
gaagatttgaaggtggttctgagcggtctcggcatcactctgaaaccgtctcagtacaag
gccgatgctaaggtgctgctgaagcttgtttgcgaacagtttttcggtccctcaaccggg
ttcgtcgatatgatcgtgagccacattccctcacccgacaagtctgcggagaggtatttg
gagaaatactacacaggccctctggacacgaaggtggctcagtccgtgaaaatctgcaac
caagatgggccgttggttgttcacgttacaaagctcttcagcacagcggatgccaagagc
ttctattcgttcggtcgtgttctgagtggcacagctcgtcctggcatgcaggtccgagtc
ctgggagaagggtactcaacagatgatgacgaagacatggccatggcaacgatttccgat
gtgtttattggcgagtcaagatacaacatccccacggatggtgtaccggctggcaactat
gtgcttcttggcggagtcgacaactccatcgtcaagacagcaaccctcgttccgcccaag
ctcgaagacgatgaggacccctacatctttaagcctgttacgcatttcacagaatccgtt
cttaaggtggctgttgagcctatcaacccttcggaactccccaagatgcttgacggtctg
cggaagatccaaaagagctacccgctgatcaccacgaaggtcgaggagtcaggagaacac
atcgtgctgggaactggcgagctgtacatggactgcgttctgcacgatttgagacgccta
tacgccgatatggagataaaggtgtcagatcccgtcacacgattctgcgaaacagtcgtg
gagcaatcagcgacaaaatgctacgccatcacaccgaacaagaagaacaagatcacaatg
gtggccgagcaactggacaagggcatctcagaagacatcgagtcaggcaaggtcaagatc
agggaccctatccgcaagacggccagctacttcgaagagacttacggctgggacaagctg
gcggcgagaagcatctgggcttttggtcctgatgagatgggccctaacatcttgcaggac
gacacattgccctctgaggtcgacaagaagctgctggcaacggtcaaggagaccattcgc
caaggttttagctgggctactagagaaggtcccctgtgtgaagagcccattcgaaataca
aagttcaggatcaccgatgtgtcgttggcgtcggaagccatcttccgtggtggcggtcag
attatccccacctccaggcgggcctgctactcctcgttcctgatggcctctcctcggttg
atggagccgctatattccgtctcagtgacgggccctgaagactctgctacagaggtttac
acgacgttggccagacgtcgtggccacgtcctccaggatggcccagtggccggcacgccc
ctctaccgcgtcaacgggctgattcctgtcatcgactcatttgggtttgagacggacctg
cgcattaagaccaagggcatggccatggtcagtttgacgtttgacagctggagcattgtg
cccggtgaccctcttgacaaggaggtcatcattcggcccctgcagccagccagcgcccag
gccacagccagagattttgtgctgaagaccagaaggagaaagggtctcagcgaggacgtg
agcgtggcgaccttcttggaacccgaattctatcagagccttatggagagtggcgcactt
ggcgactga
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