Chitinophaga agri: GWR21_20910
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Entry
GWR21_20910 CDS
T06416
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chih
Chitinophaga agri
Pathway
chih03030
DNA replication
chih03410
Base excision repair
chih03420
Nucleotide excision repair
chih03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GWR21_20910 (ligA)
03410 Base excision repair
GWR21_20910 (ligA)
03420 Nucleotide excision repair
GWR21_20910 (ligA)
03430 Mismatch repair
GWR21_20910 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chih03032
]
GWR21_20910 (ligA)
03400 DNA repair and recombination proteins [BR:
chih03400
]
GWR21_20910 (ligA)
Enzymes [BR:
chih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GWR21_20910 (ligA)
DNA replication proteins [BR:
chih03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GWR21_20910 (ligA)
DNA repair and recombination proteins [BR:
chih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GWR21_20910 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GWR21_20910 (ligA)
MMR (mismatch excision repair)
DNA ligase
GWR21_20910 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GWR21_20910 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QHS61974
UniProt:
A0A6B9ZKP3
LinkDB
All DBs
Position
complement(5242725..5244854)
Genome browser
AA seq
709 aa
AA seq
DB search
MYTKEIEITLLQLAKDLLRKLQQKESIQDLDGTLEGLRRVIIYNDWRYYVQSDPVLSDYE
YDQLFAWLKELETANPDKISADSPTQRVAQGNGKNFPTVQHLVPMLSLENSYNAEDLNDW
DRKNREQSKLEEIEYCIEPKFDGASISLIFENDILSRGATRGDGVSGEEITRNIYQISSV
PKKADFSKYGIQSIEIRGEVLINKDTFKKQNEQRVAENLQPLANPRNAASGSLRMVDPRE
VAKRGLDAFLYHMSYHVMEPGKTEPKEITTHSNTLQLFADLGFRSPAKEMKVVKGIQAVI
DYVLEFEKERDNLPYEIDGMVIKVNDYELQDRLGMTTHHPRWAMAYKFKARQATSKLRKV
EFQVGRTGSVTPVAKIDPVPIGGVTVGSISLFNEDVVREKDLKIGDTVLVERAGDVIPYI
VKSLADMRDGSEEDIKFPTHCPVCNDPLFKPEGESVWRCVNLNCEAQVVERMIHFVSKDA
MDIRSLGESNVKKFYALGLMKDIPGIYKIDFAKLEQLEGFGKKSLTNLQSAIEQSKTQPL
HRLIFGLGVRYVGETTAKTLANACNHLLDFKGWTEEQLLALEDIGPKVAGSISQFFQLHD
NIQMLEELESLGLNLKSNKADHSSGGSLNGLNFLFTGTLNKLKRSDAEEMVEQQGGKILS
GVSSKLNFLIVGDDAGSKLEKAKKINTIRILSEDEFLQLIASQTPVSES
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgtatacgaaagaaatagaaatcactttgcttcaattagcaaaggacctgttacgaaaa
ttgcagcaaaaagaaagcattcaggacctggatggtaccctggaaggcttacgccgggtt
attatttataatgactggcgttactatgtgcaaagtgaccccgttttaagtgattacgaa
tatgatcagttgtttgcctggttgaaagaactggaaactgccaatcctgacaaaataagc
gcggactcccccactcagcgtgtagcacagggaaatggtaaaaatttcccaacggtacaa
catctggtacctatgctaagtctggagaactcctataatgcagaagatcttaatgactgg
gaccgtaagaaccgcgaacaaagcaaactggaagagattgaatactgtatagaaccgaaa
tttgatggcgccagtatttcattaatatttgagaacgatatactctcacgcggtgccacc
cgcggcgatggtgtgtctggtgaagagattacgaggaacatctaccagatcagttccgtg
cctaagaaagccgactttagtaaatatggcattcagtcaatagagatcagaggagaagtg
ctgatcaataaagacacctttaaaaaacagaacgaacaacgcgtagcagaaaacttacag
ccactggccaatccccgtaatgcggcttccggctccttgcgcatggttgatccccgggaa
gtagccaaacgtggactggacgcattcctttatcacatgagctatcacgtgatggaaccc
ggtaaaacagaaccgaaagagatcacaacacatagtaatacattacaactatttgccgac
ctcggtttccggtctcctgcaaaggaaatgaaagtcgtgaaaggtatacaggcagttatt
gattacgtactagaattcgagaaagaaagagataatcttccttacgaaattgacggtatg
gtgatcaaggtgaatgactacgaactgcaggacagactgggcatgaccacgcatcaccca
cgctgggcgatggcgtataagttcaaagccagacaggccaccagtaaactccgtaaagta
gagttccaggtaggccgtaccggctctgttaccccggtagcgaaaattgatcctgtacct
atcggtggtgttacggttggttccatctcactgttcaatgaagatgtagtgagagaaaaa
gacctgaagatcggtgataccgtgttggtggaaagagcaggtgatgtgattccctacatc
gtaaaatccctggccgacatgcgtgatggcagcgaagaggacattaaattcccgacgcac
tgccctgtatgtaatgatccattattcaagcctgagggtgaaagtgtatggcgttgtgtc
aatcttaactgtgaggcacaggtagtggaaagaatgatccattttgtcagcaaagacgcc
atggacatccgtagtctgggtgaaagcaacgtaaaaaaattctatgccctcggactgatg
aaagacattccgggtatttataaaatagactttgcgaaactggaacagctggaaggattt
ggtaaaaagtcgctcaccaatctgcaaagtgccattgagcaatcaaagacacagccctta
cacagactgatattcggtctgggcgtacgttatgtaggagaaacaaccgctaaaacactt
gccaacgcatgtaatcacctgctggacttcaagggctggacagaggagcagctacttgca
ctggaggacatcggaccgaaggtagcgggtagtatcagtcagttctttcagttacatgat
aatatccagatgctcgaagagctggaatcactgggtttgaacctgaaaagcaataaagca
gatcattcatcaggtggtagtctgaacgggttgaacttcctcttcaccggtaccttaaac
aagctgaagcgcagtgatgcggaggagatggtagaacagcagggaggcaagatactgagt
ggtgtaagtagtaagttgaacttcctgatcgttggtgatgatgccggcagcaaattggaa
aaagcaaaaaaaatcaacactatcaggatactgagtgaagatgaatttttgcagttgata
gcatcacagacaccggttagcgaatcataa
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