Chitinophaga sp. XS-30: FW415_02430
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Entry
FW415_02430 CDS
T06207
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chit
Chitinophaga sp. XS-30
Pathway
chit03030
DNA replication
chit03410
Base excision repair
chit03420
Nucleotide excision repair
chit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FW415_02430 (ligA)
03410 Base excision repair
FW415_02430 (ligA)
03420 Nucleotide excision repair
FW415_02430 (ligA)
03430 Mismatch repair
FW415_02430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chit03032
]
FW415_02430 (ligA)
03400 DNA repair and recombination proteins [BR:
chit03400
]
FW415_02430 (ligA)
Enzymes [BR:
chit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FW415_02430 (ligA)
DNA replication proteins [BR:
chit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FW415_02430 (ligA)
DNA repair and recombination proteins [BR:
chit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FW415_02430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FW415_02430 (ligA)
MMR (mismatch excision repair)
DNA ligase
FW415_02430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FW415_02430 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
BRCT_2
PSF1_C
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QEH43928
UniProt:
A0A5B9WTE7
LinkDB
All DBs
Position
598038..600131
Genome browser
AA seq
697 aa
AA seq
DB search
MYTKETEITLARLGQTLLSKPPQQSPSDMIDSLRQVLRHSDWRYYIQDDPILSDAEYDQL
FAWLKQLEKEHPELVTPDSPTQRVAQGLTKVFPTVQHLVPMLSLENSYDADDLLDWDRKA
REISGLDEIEYCIEPKFDGASISLIYEDDRLVRGATRGDGVQGDEITVNIRQIRSIPLTA
SFSAYGLQQIELRGEVLINKNTFKKLNEQRTGENLPPLANPRNAASGSLRIVDPNEVAKR
GLEAFLYNMSYHTMIENKEEPPALLTHSGTLDMLAQLGFRSPAKEMKVVRGIQAVIDYCL
EYESRRDDLPYEIDGMVIKVNSYELQDRMGMTTHHPRWAMAYKFKARQGTSKLRAVEFQV
GRTGSVTPVAKIDPVPIGGVMVGSMSLFNEDVIREKDLKIGDTVLVERAGDVIPYIVKSM
ADLRDGSETDIVFPKNCPVCKDALFKPEGESVWRCVNINCEAQVVERMIHFVSKDAMDIR
SLGESNVRKFYTLGLLKDVPGIYTLDFDAIGQLEGFGPKSVSNLQAAIEKSRAQPLHRLV
FGLGIRYVGETTAKTLAHAVEHLLDMAGFTEEQLLALEDIGPKVAGSVRQFFSNEDNVQM
LQKLEALGLNLHSTKGALSAEGTLSGQTFLFTGTLHKLKRSEAEELVEQHGGKIVSGVSS
KLNYLVVGEDAGSKLEKAKKINTVKILSEDDFIKMIE
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtacacgaaggaaacggaaattacgctggcccggctggggcagacattactgtcaaag
cccccgcagcagtcccccagcgatatgatagactcgctgcggcaggtgctccggcatagc
gactggcgctattatattcaggacgatcccattctcagcgatgcggagtacgaccagctt
tttgcctggctgaagcagctggagaaagaacatccggaactggtaacgccggattccccc
acgcagcgcgtagcgcaggggctgaccaaagtattccccaccgtgcagcacctggtgccc
atgctcagtctcgaaaactcctatgatgcggatgatctgctggactgggaccggaaagcc
cgcgagatcagcgggctggatgaaatcgagtattgcatcgaaccgaaatttgacggcgcc
agcatatcactgatctatgaagatgaccggctggtgcgcggcgctacccgtggcgatggc
gtgcaaggcgacgagatcaccgtcaacatccggcagatccgctccattccccttaccgcc
agcttctccgcttacggcctgcaacagatagagctgcgcggggaagtgctgatcaataaa
aacacctttaaaaaactgaatgagcaaaggacgggcgagaacctgccgccgctggccaat
ccacgtaacgcagcctccggctcgttgcgcatcgttgatcccaacgaggtagccaaacgg
ggactggaagcctttctgtacaatatgagctatcatacgatgatagagaacaaggaagag
ccgcctgcgctgctgacgcacagcggtacgctggatatgctggcacagctgggtttccgc
agccccgcaaaagaaatgaaggtggtgcgcggcatacaggccgtgatcgattattgcctg
gaatacgaaagccggcgggatgacctgccttacgagatcgatggcatggtgatcaaagtg
aacagttatgagctgcaggaccggatgggcatgaccacgcatcatccccgctgggcgatg
gcgtacaagttcaaagcgcggcagggtaccagcaagctgcgggccgtggaattccaggtg
gggcgcaccggctccgttacaccggtagccaagatagaccccgtgcctatcggcggggtg
atggtaggttccatgagcctttttaatgaagatgtgatccgggaaaaagacctgaagatc
ggggataccgtactggtggaaagagcgggcgatgtgatcccctatatcgtaaaatcgatg
gcagacctgcgcgacggcagcgaaacggatatcgtcttcccgaaaaactgtcccgtttgc
aaggatgcgcttttcaaacccgaaggcgagagcgtgtggcgctgtgtgaacatcaactgc
gaagcgcaggtggtggaaaggatgatccacttcgtcagcaaagatgcgatggatatccgc
agcctcggggagagcaatgtgcgcaagttctataccctcgggctgctgaaagatgtgccg
ggcatttatacgctggactttgatgctatcggccagctggaaggcttcggcccgaaatcc
gtcagcaacctgcaggccgctatagagaaatcgagggcccagccattgcaccggctggta
ttcggactgggtatccggtatgtgggggagaccacggccaaaacactcgcccatgcggta
gaacatttactagatatggcgggatttacggaagagcagttgctggcactggaagatatc
gggcccaaagtagccggatcggtgcggcaatttttcagtaatgaggataatgtgcagatg
ctgcaaaagctggaagcgctgggcctgaacctccacagcaccaaaggcgcgctgtccgca
gaaggaacgttaagcgggcagaccttcctgttcaccggcacgctgcacaagctgaaacgc
agtgaagctgaagaactggtggaacagcatggcggcaagatcgtgagcggggtgagcagc
aagctcaactacctggtggtaggggaagatgccggcagcaaactggaaaaggcgaagaag
atcaatacggtgaagatcttgtctgaagatgattttataaagatgatagaatga
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