Chitinibacter bivalviorum: HQ393_03065
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Entry
HQ393_03065 CDS
T06696
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chiz
Chitinibacter bivalviorum
Pathway
chiz03030
DNA replication
chiz03410
Base excision repair
chiz03420
Nucleotide excision repair
chiz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HQ393_03065 (ligA)
03410 Base excision repair
HQ393_03065 (ligA)
03420 Nucleotide excision repair
HQ393_03065 (ligA)
03430 Mismatch repair
HQ393_03065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chiz03032
]
HQ393_03065 (ligA)
03400 DNA repair and recombination proteins [BR:
chiz03400
]
HQ393_03065 (ligA)
Enzymes [BR:
chiz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HQ393_03065 (ligA)
DNA replication proteins [BR:
chiz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HQ393_03065 (ligA)
DNA repair and recombination proteins [BR:
chiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HQ393_03065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HQ393_03065 (ligA)
MMR (mismatch excision repair)
DNA ligase
HQ393_03065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HQ393_03065 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
Zn_ribbon_NUD
Zn_ribbon_RRN7
DUF7340
Motif
Other DBs
NCBI-ProteinID:
QLG87314
UniProt:
A0A7H9BID9
LinkDB
All DBs
Position
668581..670980
Genome browser
AA seq
799 aa
AA seq
DB search
MADIQTQAAQLRELLNRYAHEYYVLDAPSVPDAEYDRLFRELQALELAHPELQTADSPTL
RVGGQPLPQFDAVVHAVPMLSIRTETDVSEQGALSFDASVRKELDLLAIEPPVEYAAELK
FDGLAINLRYENGVLVQAATRGDGATGEDVTQNIRTIGQIPLRLKGAPPPLLEVRGEVYM
RRDDFQRLNEKQLAAGEKTFVNPRNTAAGAVRQLDPAIAAQRPLSFFGYGLGDVSAWDAA
PDTHAGILDSLAEFGFPICDVRAVVTGGDGLAQFHAKVGALRDELPFDIDGVVYKVNSLA
LQAELGFRTREPRWAVAHKYPAQEALTTVEAIDIQVGRTGSLTPVARLAPVFVGGVTVTN
ATLHNQDEIDRKDVRVGDTVVVRRAGDVIPEVVSVVLERRPMVSVPGADLFTPNETPQFG
PYRILELHPVCPVCGSKTVREPDEARVRCTGGLFCSAQRKEALKHFAGRRMMDIDGLGER
YIDQLVELDFVHNPADLYRLTLHDFLEMKRQADERDGTVPETVKAGQVTTKWAENLLAAI
EASRKPPLARLVFSLGIRHVGESTSKTLADYLGSLEKIQTAPAAILRLLPDIGATVAIAI
ADFFAEEHNRTVIAQLLASGVVPQGERAPHPALRERLTLAAILAALDIPKLTLTRCTQIV
SGINQLAALYEFSLGRLLDAGLPLELAQSLHAWLLANPSTLAQLDRLREAWLSEIPAESA
AAQGVLTGKTLVLTGTLPTLGRDEAKALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLDKA
TELGIAVLDEAALLALLGS
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggccgatattcaaactcaagccgcacaattgcgtgagctcttaaatcgctacgcgcat
gaatactatgtcctcgatgcgcccagcgtgcccgatgctgagtacgatcgcttgtttcgc
gaattgcaagctttggagctggcgcatcctgagttgcaaacagccgattcgcccactttg
cgcgtgggtggtcagccattgccgcaatttgatgctgtggtgcatgcagtgccgatgctc
tcgatccgcaccgaaaccgatgtgagtgagcagggcgcactctcctttgatgcgtcggtg
cgcaaagagctggatttgcttgcgatcgagccgcccgttgagtatgccgctgagttgaaa
tttgatggcttggcaatcaatctgcgctacgaaaatggcgtgctggtgcaggccgcaacg
cgcggagatggcgcgaccggtgaagatgtgacgcaaaatattcgcacgattggtcagatt
cctttgcgtttgaagggcgctccgccgccattgctcgaagtgcgcggtgaagtgtatatg
cgccgggatgattttcagcgcctcaatgaaaagcaacttgctgcaggcgagaaaactttt
gtgaatccgcgcaatacggcagcaggcgcagtgcgtcagcttgaccctgcaatcgctgcg
cagcgccctttatctttttttgggtatgggcttggggacgtatctgcatgggatgctgcg
cctgatacccatgcgggtatcttggatagcttggctgaatttggttttccaatttgcgac
gtgcgtgccgtggtgactggtggcgatggcttggcgcaatttcatgccaaagttggtgca
ttgcgtgatgaattgccatttgatattgacggtgtcgtttacaaggttaattcgctcgct
ttgcaggctgagttgggttttcgcacccgcgagccgcgctgggctgtggcgcataaatat
cccgcgcaagaggccttaaccacggttgaagccattgatattcaagtggggcgcaccggt
tcactcacgccggtcgcgcgacttgcgccagtttttgtcggtggtgttacggtcacgaac
gcgacactgcacaaccaagatgaaatcgaccgcaaagacgtgcgcgtgggcgatacggtg
gttgtgcgtcgcgcgggcgatgtgattcccgaagtggtttcggtggtgctagagcgccgc
ccgatggtgtctgtgcctggggctgatttgtttacgcccaatgagacgccgcaatttggg
ccgtatcgcatactcgagttgcaccccgtttgcccagtctgcggcagcaaaacagtgcgc
gagcccgatgaggcgcgcgtgcgttgtacgggcgggctgttttgctcggcgcagcgcaaa
gaggcgctaaaacactttgccggtcgccgcatgatggatattgatggcttgggtgagcgc
tatatcgatcagttggttgagctcgatttcgtgcataaccccgctgatttgtatcgtttg
accttgcacgattttctggaaatgaagcgtcaagccgatgagcgcgatgggacagtgcca
gaaacggtgaaagctgggcaggtcacgaccaaatgggccgaaaacttgttagcggcgatt
gaggcaagccgcaagccgccattggcgcgcttggtgttctcgctcgggattcgtcatgtt
ggcgagtcgacatcaaaaaccttggcggactatttgggtagtctcgaaaaaatccaaacg
gcacccgccgcgattctgcgtttgttgcctgatattggcgcgacggttgcaattgcaatt
gcggatttttttgccgaagaacataaccgcacggtgatcgcacaattgctcgccagtggt
gtggtgccgcaaggtgagcgtgcaccgcatccagcgttgcgcgagcggttgacgttggcg
gcgatattggccgcgctggatattcctaaattgacgctgacccgttgcacacagattgtc
agcgggattaatcaattagccgcgttgtatgaatttagcctaggccgcctgctagacgca
ggcttgcctttggagttggcgcaatcgctgcacgcttggctgctagcaaatccaagcact
ttggcgcagcttgatcgcttgcgtgaggcatggctgagtgaaatcccagccgaaagcgcc
gctgcgcagggggtgttgacggggaaaacgctggtgctaacggggacgctgccaaccttg
gggcgagatgaggccaaagctttgattgaagccgctggcggcaaggtgtcgggcagtgtg
tcgaagaagaccgattatgtcgtggcgggcgaagcggcgggtagtaaattggataaagct
actgagctgggtattgctgttttggatgaagcagctttgctggcattgctggggagttaa
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