Cardiobacterium hominis: NCTC10426_00363
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Entry
NCTC10426_00363 CDS
T05791
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chj
Cardiobacterium hominis
Pathway
chj03030
DNA replication
chj03410
Base excision repair
chj03420
Nucleotide excision repair
chj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10426_00363 (ligA_2)
03410 Base excision repair
NCTC10426_00363 (ligA_2)
03420 Nucleotide excision repair
NCTC10426_00363 (ligA_2)
03430 Mismatch repair
NCTC10426_00363 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chj03032
]
NCTC10426_00363 (ligA_2)
03400 DNA repair and recombination proteins [BR:
chj03400
]
NCTC10426_00363 (ligA_2)
Enzymes [BR:
chj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10426_00363 (ligA_2)
DNA replication proteins [BR:
chj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10426_00363 (ligA_2)
DNA repair and recombination proteins [BR:
chj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10426_00363 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10426_00363 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
NCTC10426_00363 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10426_00363 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
VEG76343
LinkDB
All DBs
Position
1:406200..408206
Genome browser
AA seq
668 aa
AA seq
DB search
MTDTTRLAALREEIRAHDHAYYVLDNPLIADAEYDALLRELRALEAASGEPVPADSPSQR
VGGKADGAFAPVAHAVPMLSLDNVFSEEEFAAFVKRLQERLDHDELLLSAEPKFDGLAIS
LRYENGVLTRAATRGDGATGEDVTANVRTIRAIPLRLLDATPPAVIEIRGEIYMPKAAFA
ALNAAAERDGGKTFANPRNAAAGSLRQLDPAITASRHLSFYAYGLGAHDGYALPATYSAL
LAQYRDWGVPVCPLQESLSSAAAAVAYMDALGKKRHDLPYEIDGVVYKADRYADQQAAGF
VSRAPRWAIAWKFPAVEKTTVVEAIDVQVGRTGAVTPVARLRPVEVGGVTVTNATLHNAD
EVARKDVRVGDTVFVRRAGDVIPEIVKTVLEARPADSQPFAMPTHCPVCESEIIRPEGEA
VARCSGGLHCRAQRVQALIHFASRKALDIQGLGDKLIEQLVQDGRVHSPADLFALTLADW
AALPRMAEKSAQNILAALEAAKATTLPRFIYALGIREVGNVSAELLARHYRELPALLAAS
EDDLQAIDGIGPVMAQYIRHFFLDDANRAVIAALQAAGIHWPVVEAPVIAADSPLAGKTV
VITGTLPTMTRDEAAAHIARLGGKTASAVSKKTDYLLAGDKAGSKLEKAQSLGVAIIDEA
QLLAWLEP
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaccacccgccttgccgccctgcgcgaagaaatccgtgcgcacgaccacgcc
tactacgtccttgataatccgctgattgccgacgccgaatacgacgcgctgctgcgcgag
ctgcgcgcgcttgaagccgcgagcggcgaacccgtccccgccgattcgcccagccagcgc
gttggcggcaaggcagatggcgcttttgccccggtggcgcacgccgtgccgatgctgtcg
ctggataacgtcttcagcgaagaggaatttgccgccttcgtcaagcgcttgcaggagcgg
cttgaccatgatgagctgctgctttccgccgagccgaagttcgacggccttgccatcagc
ctgcgttatgaaaatggtgtcctcacccgcgcggcgacccgtggcgatggcgcgaccggc
gaggacgtgaccgccaatgtacgcaccatccgcgccattccgctgcgcctgctcgatgcc
acgccgcctgccgtcatcgaaattcgcggcgagatttatatgccgaaggccgcctttgcc
gcgttgaacgctgcagcagagcgcgacggcggcaagacgtttgccaacccgcgcaacgcc
gccgccggcagtctgcgccagctcgaccccgcgattaccgccagccgccatttgagtttt
tatgcctacggcctcggcgcgcacgacggctacgccctgcccgccacgtacagcgccctg
ctcgcgcaataccgcgactggggcgtgccggtctgcccgctgcaagaaagcctcagcagc
gcggccgccgccgtcgcctacatggacgcgctcggcaagaagcggcacgacctgccctat
gaaatcgacggcgtcgtgtacaaggccgaccgctacgccgaccagcaggcggcgggcttc
gtctcgcgcgcgccgcgctgggcgattgcctggaaattcccggcggtggagaaaaccacc
gtggtggaggcgattgacgtgcaggttggccgcaccggcgccgttaccccggtggcgcgg
ctgcgcccggtggaagtcggcggcgtaaccgtcaccaacgccaccctgcacaacgccgac
gaagtggcgcgcaaggacgtgcgcgtcggcgataccgtcttcgtgcgccgcgcgggtgac
gtcatcccggaaatcgtcaaaaccgtactggaggcgcgcccggcggacagtcagccgttt
gccatgccgacgcattgcccggtgtgcgaatccgaaatcatccgccccgaaggcgaggcg
gtggcgcgctgctccggcgggctgcattgccgcgcgcagcgggtgcaggcgctgattcac
ttcgcctcgcgcaaggcgctggacatccagggactgggcgacaagctgatagagcaactg
gtgcaggacgggcgcgtgcatagccccgccgacctctttgccctcacccttgcggattgg
gcggcgctgccgcgcatggcggaaaaatcggcgcaaaacatcttggcggcgctggaagcg
gcgaaggcgaccaccctgccgcgcttcatctacgcgctcggcatccgcgaagtgggcaac
gtcagcgccgaactgctcgcgcgccactaccgcgaactgcccgcgctgctcgccgccagc
gaagacgacctgcaagccattgacggcatcggcccggtgatggcgcagtacatccgccac
ttcttcctggacgacgccaaccgcgcggtgattgccgcgctgcaagcggcgggcatccat
tggcccgtcgtcgaagcgccggtgattgccgccgacagcccgctcgccggcaagacggta
gtcatcaccggtaccctgccgacaatgacgcgcgacgaagccgcggcgcacatcgcccgc
ctcggcggcaaaaccgcgagcgccgtctcgaaaaaaaccgactacctgctcgcaggcgac
aaggcagggagcaagctggaaaaggcgcagtcgctcggcgtcgccatcattgacgaggcg
caactgctggcgtggttggagccgtag
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integrated database retrieval system
