Chryseolinea soli: D4L85_26600
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Entry
D4L85_26600 CDS
T05641
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chk
Chryseolinea soli
Pathway
chk03030
DNA replication
chk03410
Base excision repair
chk03420
Nucleotide excision repair
chk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D4L85_26600 (ligA)
03410 Base excision repair
D4L85_26600 (ligA)
03420 Nucleotide excision repair
D4L85_26600 (ligA)
03430 Mismatch repair
D4L85_26600 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chk03032
]
D4L85_26600 (ligA)
03400 DNA repair and recombination proteins [BR:
chk03400
]
D4L85_26600 (ligA)
Enzymes [BR:
chk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D4L85_26600 (ligA)
DNA replication proteins [BR:
chk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D4L85_26600 (ligA)
DNA repair and recombination proteins [BR:
chk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D4L85_26600 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D4L85_26600 (ligA)
MMR (mismatch excision repair)
DNA ligase
D4L85_26600 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D4L85_26600 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH
BRCT_2
PTCB-BRCT
Zn_ribbon_NUD
Zn_ribbon_Top1
Zn_Ribbon_TF
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AYB33928
UniProt:
A0A385SYW2
LinkDB
All DBs
Position
6380218..6382230
Genome browser
AA seq
670 aa
AA seq
DB search
MKPEQAKAEIEKLTEKINHHNDLYYQQNRTEISDLEFDKLLEKLIALEEEFPQFKDSHSP
TQRVGGTVTKEFATVYHKYPMLSLSNTYSQEELEDFDGRVAKALDGEAYEYFCELKFDGV
SISLTYENGLLTRGVTRGDGVRGDDVTANVMTVRNIPLKAKGKNVPPAFEVRGEVFMPKH
AFQQLNKEREDIGEEKYANARNTTSGTLKMQNSAEVARRKLDCFAYYLLGDETGLKTHEE
SIHKLESWRFNVSPTYKKCKNIQEVLEYIQHWENKRQELPLETDGVVIKVNSLEQQRQLG
FTAKSPRWAIAYKYKAQSISTRLNGITYQVGRTGAVTPVAELEPVFLAGTTVKRASLHNA
NEIARLDLRIGDYVYVEKGGEIIPKVTGVEMEKRPKGSAPVVYIDKCPECGTKLVRVEGE
AAFYCPNLDGCPPQIRGRIEHFIQRKAMDIDSLGEKTIEQLHLLGLVKSPADLYDLKKED
LLRLEGFKEKSAQNLLAGIDKSREVPFESVLFAIGIRYVGKTVAEKLARYFKTIEKVAAA
SKEELLAAPEIGEKIAQTVFDYFRNPESQREIARLKAAGLHFESTAKEPEKESDVLGNKS
FVISGVFEKYEREELQEIILKNGGRVLSSVSGKLDYLLAGDNMGPSKREKAEKLGVTIIS
ELDFEKLMKG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccgaacaggcaaaagcagagatcgaaaaactcaccgaaaagatcaatcaccac
aatgatctttactatcaacagaaccgcaccgagatcagcgacctggagttcgacaagctc
ctggaaaaactgattgcgctggaggaagaatttccgcagttcaaggactcccactctccc
acacaacgggtgggtggcactgtgaccaaggagtttgctaccgtctatcacaagtatccc
atgctctcgctgagcaatacctacagccaggaagagctggaggacttcgacgggcgcgtc
gccaaggcactcgacggcgaggcctatgaatatttttgcgaactaaaattcgacggcgtc
tccatcagcctcacctacgagaacggtctgctcacccggggcgtcacccgcggcgacggc
gtgcgcggcgacgatgtgacagccaacgtgatgactgtccgcaacattcccctgaaagca
aaaggcaaaaacgttccacccgcctttgaagtgcgcggcgaagtgttcatgcccaagcat
gcctttcaacagttgaacaaagagcgcgaagacattggcgaagaaaaatacgccaacgcc
cgcaataccacctcgggcacgctgaaaatgcaaaactccgccgaagtggcgcgacgcaaa
ctggattgctttgcctactatctgctgggcgacgaaaccgggctgaagacgcacgaggaa
agcattcacaaactcgaatcgtggcgcttcaacgtatcgcctacctacaaaaagtgtaag
aatattcaggaggtgctcgaatatattcagcattgggagaacaaacgccaggagttgccc
ctggagaccgacggtgtggtgatcaaagtgaacagccttgagcaacaacgccagctgggc
ttcaccgcaaaaagtccgcggtgggccattgcctataaatacaaagcccagagcatcagc
acgcggctgaacggcatcacctaccaggtgggccgcaccggtgccgtgacaccagtagcc
gaactggaacccgttttcctggccggcaccaccgtgaagcgcgcgtcgcttcacaatgcc
aacgagatcgcccggttggacctgcgcatcggcgattatgtttatgtcgaaaagggtggc
gagatcattccgaaggtcactggtgtggagatggagaaacggcccaaaggaagtgcgccc
gtggtctacatcgacaaatgtcccgaatgtggcaccaaactcgtacgcgtggaaggcgaa
gccgcgttctattgccccaacctcgacggctgtccaccccagatcagggggcgcatcgaa
cattttatccagcgcaaggcgatggacatcgactcgctgggtgaaaaaacgatcgagcaa
ctgcacctgcttgggcttgtaaaaagtcccgccgatctctacgacctgaagaaagaagac
ttgctgcgcctggagggtttcaaggagaaatcggcgcaaaatctgttggccggcatcgac
aaatcgcgcgaagtgccgtttgagagtgtactgtttgccatcggcatccgctacgtgggc
aagacggtggccgaaaagctggcgcgctatttcaagaccatcgaaaaggtagccgccgcc
tccaaagaggaattgctggccgccccggagatcggtgaaaaaatcgcccaaacggttttt
gattacttccgaaacccggaaagtcagcgagagatcgcgcgcctcaaagcggccggtctc
cattttgaaagcacggctaaagaacccgaaaaggaaagcgatgtgctcggaaacaagtcg
ttcgtgatctcgggtgtttttgagaagtacgaacgggaggaattacaggagatcatcctc
aagaatggcggccgggtgctgtcttctgtttccggaaagttggattatttgctggcaggt
gataatatggggccttcaaagcgcgagaaggcggaaaaactcggtgtgacgattatttcc
gaactggattttgaaaaattgatgaaaggataa
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