Corynebacterium halotolerans: A605_06330
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Entry
A605_06330 CDS
T02472
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chn
Corynebacterium halotolerans
Pathway
chn03030
DNA replication
chn03410
Base excision repair
chn03420
Nucleotide excision repair
chn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A605_06330 (ligA)
03410 Base excision repair
A605_06330 (ligA)
03420 Nucleotide excision repair
A605_06330 (ligA)
03430 Mismatch repair
A605_06330 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chn03032
]
A605_06330 (ligA)
03400 DNA repair and recombination proteins [BR:
chn03400
]
A605_06330 (ligA)
Enzymes [BR:
chn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A605_06330 (ligA)
DNA replication proteins [BR:
chn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A605_06330 (ligA)
DNA repair and recombination proteins [BR:
chn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A605_06330 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A605_06330 (ligA)
MMR (mismatch excision repair)
DNA ligase
A605_06330 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A605_06330 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Arc_PepC
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AGF72272
UniProt:
M1NS03
LinkDB
All DBs
Position
1371192..1373264
Genome browser
AA seq
690 aa
AA seq
DB search
MTDPADEPAELTDGSDTDLRRQWNELAEEVRHHRDLYYNGQPAIPDADFDALFRRLQALE
EAHPELAVPDSPTMEVGAPPVASSTFDNVEHLERMMSLDNVFDAGELAEWLARTPSGTYL
TELKIDGLSIALVYRDGVLERAATRGDGRVGEDVTANARVIDDIPHRLTGTDEFPVPALL
EVRGEVFIAIEDFAEVNELRQAEGGKPFANPRNAAAGSLRQKNPEDVRRRRLRMIAHGIG
AREGFTPDSQHDAYRALAAWGLPVSPYTEQVHSAGEVVERVTYWADHRHDAVHEMDGLVV
KVDSYAEQRALGATSRAPRWAIAYKYPPEEVTTRLLDIQVGVGRTGRVTPFAVMEPVLVA
GSTVAMATLHNQTEVKRKGVLIGDTVVIRKAGEIIPEVLGPVAEKRDGTEREFIFPTLCP
SCGTRLAPQKEGDADWRCPNTRSCPAQLSSRLTYLAGRGGFDIEALGEKGAQDLIRRGIL
TDESGLFDLTEGKLLDSQVYTAKNGTVNASGKKLLDNLETAKKTDLWRVLVALSIRHVGP
TAARALATRYRSLQALVDAPVEDIAETDGVGTIIAESFREWFEVDWHRAIVERWAAAGVT
MEDDADDLAEQTLQGLTIVVTGSLEGFSRDGAKEAVIARGGKASGSVSKKTDYVVVGENA
GSKETKARDLGLPILDEAGFVRLLETGNPE
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaccccgccgacgaacccgccgagctgaccgacgggtccgacaccgatctgcgc
cggcagtggaatgagctggccgaggaggtccgccaccaccgggacctgtactacaacgga
cagcccgcgatcccggacgccgacttcgacgcgctcttccgcaggctccaggctctcgag
gaggcgcatccggagctggccgtgccggacagcccgaccatggaggtcggcgccccgccg
gtggccagctccaccttcgacaatgtcgagcacctcgaacggatgatgagcctggacaac
gtcttcgacgccggggaactcgccgagtggctcgcacgcaccccgagcggcacctacctc
accgagctgaagatcgacggcctgtccatcgcgctggtctaccgcgacggggtgctcgag
cgcgccgccacacgcggtgacggccgcgtcggcgaggacgtcaccgccaacgcgagggtc
atcgacgacatcccgcacaggttgaccggcaccgacgagttcccggtgccggcgctgctg
gaggtccgcggcgaggtgttcatcgcgatcgaggacttcgccgaggtcaatgagctgcgc
caggccgagggcggaaagcccttcgccaacccgcgcaacgcggcggccggttccctgcgg
cagaagaaccccgaggacgtgcgcaggcgccgcctgcggatgatcgcccacggcatcggc
gcccgggagggcttcaccccggacagccagcacgacgcctaccgggcactggccgcctgg
gggctgccggtgtccccgtacaccgagcaggtgcactcggccggggaggtcgtcgagcgc
gtgacctactgggccgaccaccgccacgacgccgtccacgagatggacggcctggtggtc
aaggtcgactcctacgccgagcagcgggcgctgggggcgacgtcgcgggccccgcgttgg
gcgatcgcctacaagtacccgccggaggaggtgaccacccggctgctggacatccaggtc
ggcgtgggccgcaccggccgggtcacccccttcgccgtgatggagccggtcctcgtcgcc
ggctccaccgtcgcgatggccacgctgcacaaccagaccgaggtcaagcgcaagggcgtg
ctcatcggcgacaccgtggtcatccgcaaggccggcgagatcatccccgaggtgctcggc
cccgtcgccgagaagcgcgacggcaccgagcgcgagttcatcttccccacgctgtgcccg
tcgtgcggcacccgtctggcaccgcagaaggagggcgacgccgactggcgctgcccgaac
acccgcagctgccccgcccagctgtcctcgcggctgacctacctggccgggcgcggcggc
ttcgacatcgaggccctcggggagaagggcgcgcaggacctcatccgccgcggcatcctc
accgacgagtccgggctgttcgacctgacggaggggaagctgctggactcgcaggtctac
accgcgaaaaacggcacggtcaacgcctcgggcaagaaactgctggacaacctcgagacg
gcgaagaaaaccgacctgtggcgcgtgctggtcgccctgtccatccgccacgtcggcccc
accgccgcccgcgcgctggccacccgctaccgctcgctgcaggcgctcgtcgacgccccg
gtcgaggacatcgccgagaccgacggggtgggcacgatcatcgcggagtccttccgcgag
tggttcgaggtcgactggcaccgcgcgatcgtcgagcgctgggccgcggccggcgtgacg
atggaggacgacgccgacgacctcgccgagcagacgctgcaggggctgacgatcgtggtc
accggttcgctggagggcttcagccgcgacggcgcgaaggaggccgtcatcgcccgtggc
ggcaaggcctccggctcggtgtcgaagaagaccgactacgtggtggtcggggagaacgcc
ggctccaaggagacgaaggcccgcgacctgggcctgccgatcctggacgaggccggcttc
gtccggctgctggagaccgggaacccggagtag
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