Chitinophaga horti: MKQ68_20425
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Entry
MKQ68_20425 CDS
T09154
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chor
Chitinophaga horti
Pathway
chor03030
DNA replication
chor03410
Base excision repair
chor03420
Nucleotide excision repair
chor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MKQ68_20425 (ligA)
03410 Base excision repair
MKQ68_20425 (ligA)
03420 Nucleotide excision repair
MKQ68_20425 (ligA)
03430 Mismatch repair
MKQ68_20425 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chor03032
]
MKQ68_20425 (ligA)
03400 DNA repair and recombination proteins [BR:
chor03400
]
MKQ68_20425 (ligA)
Enzymes [BR:
chor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MKQ68_20425 (ligA)
DNA replication proteins [BR:
chor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MKQ68_20425 (ligA)
DNA repair and recombination proteins [BR:
chor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MKQ68_20425 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MKQ68_20425 (ligA)
MMR (mismatch excision repair)
DNA ligase
MKQ68_20425 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MKQ68_20425 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
BRCT_2
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UYQ92453
LinkDB
All DBs
Position
5086415..5088526
Genome browser
AA seq
703 aa
AA seq
DB search
MYTKETERTLTQVAKELLSLLPEEGMINESATDTVEALRRVIRYNDYRYYIQDDPVLSDF
EYDQLFAWLKKLEKTYPDLMTPDSPTARVAQGLSKNFPSVQHLVPMLSLENSYNEDDLTD
WDRKTRELTGLPEIEYCIEPKFDGASISLIYENDLLTRGATRGDGVAGDDITTNIRQIRT
IPLSAPFSHYGIQQIEIRGEVLINKNTFKKFNDQRMADNLPPLANPRNAASGSLRMVDPK
EVAKRGLEAFLYHMSYHVMLDGQTEPAPLQSHSGTLDLLYELGFRSPAKEKTVVKGIKAV
IDYVHNFEARRDDLPYEIDGMVIKVNNYDLQDRLGMTTHHPRWAMAFKFKARQATSKLRN
VEFQVGRTGSITPVAKIDPVPIGGVMVGSISLFNEDVIREKDLKIGDTVLVERAGDVIPY
IVKSMADLRDGSEKDIIFPKTCPVCDHELFKPEGESVWRCNNINCEAQVVERIIHFVSKD
AMDIRSFGESNVRKFYGLGILKDVPGIYEMDFTEIAKQGGFGAKSITNLTTAIEHSKTQP
LHRLIFGLGIRYVGETTAKTLAHAVKELTELKDFTEEQLLALEDIGPKVAGSIRQFFSDE
GNVQMLERLRALGVNLQNTQGSLSAEGTLSGQTFLFTGTLSKLKRSDAESIVEQHGGKLL
SGVSSKLNYLVVGEDAGSKLEKAKKINTIKILTEDDFIKLVEN
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgtacacgaaagaaacggaaagaactttaacgcaagtagctaaagagctgcttagcctg
ttgccggaagagggcatgataaatgagagcgctaccgacacggtggaagcgctgcgtcgc
gtgatccgctataacgactaccgttattacatacaggacgacccggtgttgtccgacttt
gaatatgatcaattgttcgcctggctcaagaagcttgaaaaaacatacccggacctgatg
acgcccgactcgcctaccgcacgtgtggcgcagggcctttcgaaaaacttcccttcggtg
caacacctcgtaccgatgttaagtctcgaaaactcttacaatgaagatgacctcacggac
tgggaccgcaaaacccgcgagctgacaggcttgccggaaattgaatactgcatagaaccc
aagttcgatggcgccagtatttccctcatttacgaaaacgatctgctcacacgcggcgct
acccgcggcgatggtgtagcgggtgacgatatcactacgaacatccgccagataagaacg
atcccgttgtcggcaccgttttcgcattacggcatacagcagatcgagatccgtggcgag
gtgctcatcaacaaaaacacgtttaagaaattcaatgatcagcgcatggccgacaacctg
ccgccgctggccaatccgcgcaacgccgcatcgggctcattgcgcatggtcgatccgaaa
gaggtggccaaacgcggactggaagcgttcctgtatcatatgagttaccacgtgatgctg
gacggacaaacggaaccagccccgttgcaatcacatagtggcacgttagatctgctgtat
gaattaggcttccggagcccggcgaaagagaagacggtagtgaaaggtattaaggcggtg
attgattatgtacacaatttcgaagcccgccgcgacgatctgccatatgagatcgacggc
atggtgatcaaagtaaataactacgatttacaagaccgcctcggcatgaccacccatcac
ccacgctgggccatggcgtttaaatttaaagcacgccaggcgacaagcaaactgcggaac
gtagagttccaggtaggccgtaccggctccattacaccagtcgcgaaaatcgatccggtg
ccgattggcggcgtaatggtaggttccatttcgctctttaatgaagacgtgatccgcgag
aaggatttgaagataggcgacaccgtactggtagaacgcgccggcgacgtgatcccgtac
attgttaaatcaatggccgatttgcgtgatggttcggagaaagatatcatcttccctaaa
acctgcccggtttgtgatcacgaattatttaagccggaaggtgaaagtgtatggcgctgc
aacaacatcaactgcgaagcgcaggtagtggaaaggatcattcacttcgtcagcaaagat
gcgatggacatccgcagctttggcgaaagcaacgtgcgtaagttttacggcctcggcatc
ctcaaagatgtaccgggtatttatgaaatggactttactgagatcgcgaagcagggcggg
tttggagcaaagtctatcaccaatcttaccaccgctattgagcactccaaaacgcaaccg
ttacaccgtttgatcttcggcctcggcattcgttacgttggagaaacgacggctaaaacg
ctggcgcatgccgtgaaggagcttacggagttaaaagattttacagaagaacaactgctc
gcgttagaagatatcggtccgaaagtagcaggttccatccgccagttctttagtgatgaa
ggcaacgtacaaatgctcgaacgcttacgggcgttgggtgtgaacctgcagaacacccaa
ggcagcctatctgccgaaggcaccctgagcggacaaacatttttgttcacgggcaccctg
tccaaactaaaacgcagcgatgcagaatccatcgtagaacaacacggcggcaaactactc
agcggcgtaagcagcaaacttaactacctggtagtgggtgaagatgccggcagcaaactg
gaaaaggcaaagaagatcaacaccatcaaaatattaacggaagacgatttcattaaactg
gtagaaaactga
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