Chryseobacterium sp.: F7R58_02770
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Entry
F7R58_02770 CDS
T09035
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chra
Chryseobacterium sp.
Pathway
chra03030
DNA replication
chra03410
Base excision repair
chra03420
Nucleotide excision repair
chra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F7R58_02770 (ligA)
03410 Base excision repair
F7R58_02770 (ligA)
03420 Nucleotide excision repair
F7R58_02770 (ligA)
03430 Mismatch repair
F7R58_02770 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chra03032
]
F7R58_02770 (ligA)
03400 DNA repair and recombination proteins [BR:
chra03400
]
F7R58_02770 (ligA)
Enzymes [BR:
chra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F7R58_02770 (ligA)
DNA replication proteins [BR:
chra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F7R58_02770 (ligA)
DNA repair and recombination proteins [BR:
chra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F7R58_02770 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F7R58_02770 (ligA)
MMR (mismatch excision repair)
DNA ligase
F7R58_02770 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F7R58_02770 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Zn_ribbon_3
DUF7575
Motif
Other DBs
NCBI-ProteinID:
QFG52521
UniProt:
A0A5P5ZPF1
LinkDB
All DBs
Position
complement(589393..591393)
Genome browser
AA seq
666 aa
AA seq
DB search
MTDNIQKKIEDLRTELHQHNYNYYTLDEPSISDFEFDMLLKELQELEAKHPEFYDANSPT
MRVGGAITKNFPTVTHQFRMYSLDNSYDFVDLEDWEKRLQRTLDEPVEYVAELKYDGASI
SILYENGLLKEAVTRGDGFRGDEITPNVKTISDIPLQIKGDFPDKFYVRGEIYLTRKNFD
KINKRREEEGFDPFMNPRNTASGSLKIQDSAEVRKRGLSSVLYQFISEENTAATHWELLQ
KTKSWGFRISEQMKLCKSLDEVKEFITYWDSHRHELSFDIDGIVVKVNSLAQQKKLGYTA
KSPRWATAHKFKAEKVETQLQKVTYQVGRTGAITPVANLKPVLLAGTVVKRASLHNEDII
AKLDLHDHDFVYVEKGGEIIPKIVGVNHDKREAGSLPIQYIKNCPECGTELVKVEDQAIH
FCPNDLHCPPQVVGRMIHYVSRKALNIDNLGSETIEQLYRAKLVENPADFYALTKEQLLP
LERMAERSAQNIIEGIEKSKEIPFEKVLYGIGIKHVGETVAKKLAKNFQSIEELKNATAD
ELVQVEDIGGKIAITITAFLQNPENLLMLERLKAYGVQLEAGENTNEVLSNTFEGKTFLF
TGKLSLFTRDEAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQEIGTIEVLDEQQ
FLDLIS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaatattcaaaaaaaaatagaagacctacgcacagaacttcatcagcataac
tataactattatacgctggatgagccttccatttctgattttgaatttgacatgctgctg
aaagaacttcaggaattggaagcaaaacatccggaattttatgacgccaattcacctaca
atgcgggtgggaggagccattaccaaaaacttccctactgttacccaccagttcagaatg
tattccctggacaattcttatgatttcgtcgatttggaagattgggaaaaacggctgcag
cgaactttagacgaacctgttgagtatgtggcagaactcaaatatgacggagcctccatt
tcaatcctttacgaaaacggcctgctgaaggaggcagtaacacgcggcgacggtttccgc
ggcgatgagattacacctaacgtgaaaaccatttcagatattccgttgcagattaaaggt
gattttcctgataaattctatgttagaggcgaaatttacctgacccgaaaaaactttgac
aagatcaacaaaagacgggaggaagaaggtttcgacccgttcatgaacccgcggaataca
gccagcggcagtctgaagattcaggattcggcagaagttaggaaacgcggactgtcttcc
gttctgtatcagtttatttccgaagaaaataccgctgcaacgcattgggaacttttgcag
aaaacgaagtcgtggggtttcagaatttcggagcagatgaaactttgtaaaagcctggac
gaagtaaaggagttcatcacctactgggatagccaccgtcatgaattgagctttgatata
gacggaattgtagtgaaagtgaacagcctggctcagcagaaaaagttgggttacacagca
aaatccccgcgctgggccacagcgcacaagttcaaggcagagaaggtggaaacgcagctt
caaaaggtaacctatcaggtaggacgaaccggagccataacacccgtagccaacctgaaa
ccggtcctgctggccggaaccgtagtaaagagagcgagtttgcacaatgaggacatcata
gccaaactagaccttcacgatcatgactttgtttatgttgagaaaggcggcgaaatcatt
ccaaagattgtgggggtaaatcatgacaaaagagaagccggcagtttgcccatccaatac
ataaaaaattgccccgaatgcggtactgaactggttaaggtggaagatcaggccattcac
ttttgcccgaatgacctgcactgtccgccacaggtggtgggtcggatgatccattatgtc
tcgcgcaaagccctgaacatagataatctggggagcgaaaccattgaacagctttaccgg
gcgaaactggtggaaaacccagccgatttttacgctttgacaaaagagcagcttttacca
ctggaaaggatggccgaaagatcggcccaaaatatcatagaaggaatagaaaaatcaaag
gaaatacctttcgaaaaagtcctttacggaattggcattaagcatgtgggcgagactgta
gctaagaaactggccaagaatttccaaagtattgaagaactgaaaaacgctacggccgat
gagctggttcaggtggaggatattggaggaaagattgcgataaccatcactgcgttcctt
cagaatcctgaaaacctgctgatgctggagcgcctaaaggcgtatggtgtacagttggaa
gcaggcgaaaacacgaatgaagttctgagcaatacttttgaaggcaagacctttcttttt
accggtaaactctcacttttcacgcgcgacgaagctgaagaaatggtagaaaaacatggc
ggaaaaaatatttcagcggtctctaaaaaccttaactatctggtggttggtgagaaagcg
ggcagcaaacttaaaaaagcacaggaaataggcacgatagaagtgttggatgagcagcag
tttctggatttgataagttaa
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integrated database retrieval system
