Chryseobacterium gotjawalense: QGN23_02510
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Entry
QGN23_02510 CDS
T09471
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chrc
Chryseobacterium gotjawalense
Pathway
chrc03030
DNA replication
chrc03410
Base excision repair
chrc03420
Nucleotide excision repair
chrc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QGN23_02510 (ligA)
03410 Base excision repair
QGN23_02510 (ligA)
03420 Nucleotide excision repair
QGN23_02510 (ligA)
03430 Mismatch repair
QGN23_02510 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chrc03032
]
QGN23_02510 (ligA)
03400 DNA repair and recombination proteins [BR:
chrc03400
]
QGN23_02510 (ligA)
Enzymes [BR:
chrc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QGN23_02510 (ligA)
DNA replication proteins [BR:
chrc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QGN23_02510 (ligA)
DNA repair and recombination proteins [BR:
chrc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QGN23_02510 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QGN23_02510 (ligA)
MMR (mismatch excision repair)
DNA ligase
QGN23_02510 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QGN23_02510 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
BRCT_2
Gpi1
Auto_anti-p27
Zn_ribbon_3
DUF7575
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
WHF52157
LinkDB
All DBs
Position
complement(552691..555150)
Genome browser
AA seq
819 aa
AA seq
DB search
MSENIQQKIEELRAELHQHNYNYYILDEATISDFEFDLKLKELQELEKAYPEFYDPNSPT
LRIGGEITKNFPTIQHQFRMYSLDNSYDFDDLEDWEKRIIKTIDEPVEFVAELKYDGASI
SILYENGKLKQAVTRGDGFQGDEITANVKTISDIPLTLKGNFPHQFFMRGEIYLTRKNFD
KINLRREEEGLDLFMNPRNTASGSLKMQDSGEVSKRKLSAVLYQFISSEIPAETHWELLQ
NARKWGFNVSEQARLCKNLDEIKDFINYWDQHRHELPFEIDGIVLKVNSIQQQSKLGFTA
KSPRWAMAYKFKAEKVETQLRSVTYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDII
KKLGLHEHDFVYVEKGGEIIPKIVGINLEKRNPENKEIQYITHCPECGTELVRTEDQAIH
FCPNENGCKPQIIGRIQHFVSRKAMDIEGLGGGTIDLLFHNNIISNYADLYNLKKEEIIG
LEKWLENDNSGIKFNNELQVVLSKAIFALSKSWGNLTVKEAEDLSNEIKCIDKIADIKVS
SDNKKLVKFQKHILEAKKNVVYSDFNSIDNYVSLNYILQLKFPKYFCIKTDNLFDDKSSI
LNSLNYIDEILKINDFRNDKHFEAFIASISDRSRVGIKEKSAEIIIKSIEKSKEISFDKV
LFAIGIKHVGETVAKKLAIHFQNINNLINASIPEIASVEDIGDKIAESIVDFFSKEKNQE
ILGRLQIAGLQFTLNSELEPVSNLLNNMTFLFTGSLTKFTRDKAQKLVEENGGRNLSAVS
KNLNYLIAGENAGSKVKKAEDIGTVNIITEEEFLNLINL
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaaacatccaacaaaaaattgaagaactgcgtgcggaacttcatcagcataat
tataattactacattttagatgaagctactatttcagatttcgaatttgatctgaaattg
aaggaacttcaggagttggaaaaagcgtaccccgaattttacgaccccaactctcctact
ttgcgtattggtggtgaaatcaccaagaattttccgaccattcagcatcaattcagaatg
tattctttggataattcttatgatttcgatgatttagaagactgggaaaaacgcattatc
aaaaccattgatgaacccgtagaatttgtagctgaactgaagtatgatggcgcttcaatt
tctattttatacgaaaatggaaaactgaaacaggcggtcacccgtggcgacggttttcag
ggcgacgaaatcacagcgaatgtgaaaacgatttcagatattcctttaacactgaaaggc
aactttccccatcagttttttatgcggggggaaatttatctgacccgaaaaaactttgat
aaaataaatctccgacgcgaagaagaaggtttggacttatttatgaatcctagaaatacc
gcgtcaggcagtttgaaaatgcaggactcgggagaagtgagcaagcgcaaactttcagcc
gttctctatcagtttatttcttcggaaattccggcagaaacgcattgggaactcttgcaa
aatgccaggaaatggggtttcaacgtttctgagcaggcaagattatgtaagaatttagat
gaaatcaaagacttcattaattattgggatcagcaccggcatgaacttccttttgaaatc
gacggaattgttttaaaagtaaattcaattcagcagcagtcaaaactgggtttcaccgcc
aaatcacctcgttgggcaatggcttacaaattcaaagcggaaaaggtagaaacacaatta
cgatccgtgacttatcaagttggaagaaccggcgcaattacgcctgttgcgaatctgaaa
ccggtattattggctggaaccatagttaaaagagccagtttgcacaatgaagatatcatt
aaaaaactcggtttgcatgaacatgattttgtttatgttgaaaaaggcggtgaaattatt
ccaaagattgtaggaattaatttagaaaaaagaaatcccgaaaacaaagaaattcaatac
atcacgcactgtcccgaatgcggaacggaactggtgagaactgaagatcaggcgattcat
ttctgtccgaatgaaaatggttgtaagccacaaataattggaagaattcaacattttgtg
agccggaaagccatggacattgaaggtttgggaggaggaactattgatttactatttcac
aataatataatttcaaattatgcagatctatataatctaaaaaaagaagaaataataggt
cttgagaaatggcttgaaaatgataattctggaattaaatttaataatgaactgcaagtc
gttttatcgaaagcaatttttgcattgtcaaaaagttgggggaatttaactgtgaaagaa
gcggaagatttatcgaacgaaataaaatgtatagacaaaattgcagatattaaagtttct
tctgataataagaaattagtgaaatttcagaaacacattctagaagcaaaaaagaatgtt
gtttattctgattttaattcaattgataattatgtatctctaaattacatcttacaatta
aaattccctaaatacttttgcataaaaacggacaacttatttgatgataaatcttcaatt
ttaaattcactaaactatattgatgaaattctaaaaattaatgatttcagaaatgacaaa
catttcgaagcttttatagcgagtatttctgatagaagcagagttggtataaaagaaaaa
tctgcagaaattattattaaatctatagagaaatcgaaagaaatttcctttgataaagta
ttatttgctatcggtataaaacacgtaggagaaacagttgctaaaaagttagcaattcat
tttcaaaacattaataatttgattaatgcgtcaattcctgaaattgcaagcgttgaggat
attggtgataaaatagcagaaagtatcgttgatttcttttctaaagaaaaaaaccaagag
atattaggtagactgcaaatagcaggtttacagtttacattaaattccgaattagaacca
gtctcaaacttactaaataatatgacttttttgtttaccggttcattaacaaaatttaca
cgtgataaagctcaaaaattagttgaagaaaatggtggtcgtaatttgtcagcggtaagc
aagaatttgaattatttaattgcaggcgaaaatgccggaagtaaagtcaaaaaagcagaa
gatataggaaccgtaaacataataacagaagaagaatttttaaatttgattaatctataa
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