Chryseobacterium sp. D764: KYG33_20115
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Entry
KYG33_20115 CDS
T10717
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chrd Chryseobacterium sp. D764
Pathway
chrd03030
DNA replication
chrd03410
Base excision repair
chrd03420
Nucleotide excision repair
chrd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KYG33_20115 (ligA)
03410 Base excision repair
KYG33_20115 (ligA)
03420 Nucleotide excision repair
KYG33_20115 (ligA)
03430 Mismatch repair
KYG33_20115 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chrd03032
]
KYG33_20115 (ligA)
03400 DNA repair and recombination proteins [BR:
chrd03400
]
KYG33_20115 (ligA)
Enzymes [BR:
chrd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KYG33_20115 (ligA)
DNA replication proteins [BR:
chrd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KYG33_20115 (ligA)
DNA repair and recombination proteins [BR:
chrd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KYG33_20115 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KYG33_20115 (ligA)
MMR (mismatch excision repair)
DNA ligase
KYG33_20115 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KYG33_20115 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
DUF7575
UPF0758_N
Zn_ribbon_3
zf-IS66
A2L_zn_ribbon
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QXU49036
LinkDB
All DBs
Position
complement(4402341..4404347)
Genome browser
AA seq
668 aa
AA seq
DB search
MSENIQQKIEQLRKELHQHNDNYYQLDTPTITDFEFDMLLQELQDLEAKYPEFYDENSPT
VRVGGGVTKVFPTIQHKFRMYSLDNSYDFDDLEDWEKRIIKTIEDPVEFVAELKYDGASI
SILYENGKLSQAVTRGDGFQGDEITPNVRTISDIPLTLKGDFPGQFFMRGEIYLTRKNFD
KINKLREEEGLDPFMNPRNTASGSLKMQDSAEVRKRGLSSVLYQFISDEVPAETHWELLQ
KAQSWGFKTSQQAKLCKTMAEVQEFITFWDTERHNLPFEIDGIVLKVNSLQQQRQLGYTA
KSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDII
KKLDLHEHDFVYVEKGGEIIPKIVGVNTDKRTEESKEIEYIKHCPECGTELVKIEDQAIH
FCPNELHCPPQVVGRMIHYVSRKALNIDNLGSETIEQLYREKLIENPADFYVLTKEQLLP
LERMAEKSAQNIISGIEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFPTIEELKNATVE
ELCQVEDIGAKIAVSIVDFFQNSENVLMIERLKSYGVQLEKGESTNEVLSNVLEGKTFLF
TGKLSLFTRESAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTITILDEQQ
FLDLIEKQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaacattcaacaaaagatagaacagctccgcaaagagcttcaccagcataac
gacaactattatcaactggatactcctaccattacggattttgaattcgacatgcttctg
caggaacttcaggatctggaggccaagtacccggaattttatgatgagaactcgcctacg
gtacgtgtagggggtggtgttaccaaagtcttccctaccattcagcataaattcagaatg
tattctctggacaattcttatgattttgacgacctggaagactgggaaaaaagaatcatc
aaaaccattgaagatccggtagagtttgttgctgaactaaagtatgacggtgcatccatt
tctattctttatgaaaacggaaaactgtcacaggctgttacccgtggagatggttttcag
ggagacgaaatcactccgaatgtacgtaccatttcagacattcctctgactttaaaaggt
gattttccgggtcagttttttatgcgcggagaaatttatctgaccagaaaaaactttgat
aaaattaataagcttcgtgaggaagaaggtcttgatcctttcatgaatcccagaaataca
gccagcggaagtttgaaaatgcaggatagcgctgaggtaagaaagcgcggactttcttct
gtactgtaccagttcatttctgatgaagttcctgcagaaacacattgggaactccttcag
aaagcacagagctggggcttcaaaacttctcagcaggcaaaattatgtaaaaccatggct
gaggtacaggagtttatcacattctgggatacagagcgtcataatctgccttttgaaatt
gatggtattgttttaaaggttaattcattacagcagcagagacagcttggttatactgcc
aaatctccccgctgggcaatggcttataaatttaaagctgaaaaggtagaaacagagctt
caaagtgtatcttatcaggtgggaagaacgggtgccattacgcctgttgctaatcttaaa
cctgttttactggccggaactatcgttaagagagcttctctgcataatgaggatatcatc
aagaaactggatcttcatgaacatgatttcgtctatgtagaaaaaggaggggaaattatt
ccaaaaattgtaggcgtaaacacggataaaagaacagaagaaagcaaagaaatagaatac
atcaaacattgccctgaatgtggaactgaactggtaaaaattgaagatcaggccattcat
ttctgtccaaacgaacttcactgccctccacaggtagtgggaagaatgattcattatgtt
tccagaaaagccttgaatattgataatctgggaagtgaaactattgaacagctttacagg
gaaaagctaattgagaatcctgcagacttttatgttttgacgaaagagcagcttcttcca
ttggaaagaatggctgagaaatctgctcagaatatcatttcaggaattgagaaatctaaa
gaaattccttttgagaaagtactgtacggaatcgggatcaagcatgtgggagaaacggtt
gccaagaaactggtcaaaaacttcccaacgattgaagaattgaaaaatgctactgttgaa
gagctttgccaggtagaagatatcggggccaagattgcggtaagtatagtagatttcttc
caaaactctgaaaacgtattgatgattgaacgtttaaaatcttatggggtgcagcttgaa
aagggagaaagcaccaatgaagtactatccaacgttctggaaggaaaaacattcctattc
accgggaaattatcattatttaccagagaatctgctgaggaaatggtagaaaaacatggc
ggaaaaaatatttctgcggtatcaaagaacctcaactatcttgtagtaggtgaaaaggca
ggaagcaagctgaaaaaagcgcaggatattggaacaattactattctggacgaacagcag
tttctggacctgattgaaaagcaataa
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