Chryseoglobus sp. 28M-23: IE160_09100
Help
Entry
IE160_09100 CDS
T06824
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chre
Chryseoglobus sp. 28M-23
Pathway
chre03030
DNA replication
chre03410
Base excision repair
chre03420
Nucleotide excision repair
chre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IE160_09100 (ligA)
03410 Base excision repair
IE160_09100 (ligA)
03420 Nucleotide excision repair
IE160_09100 (ligA)
03430 Mismatch repair
IE160_09100 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chre03032
]
IE160_09100 (ligA)
03400 DNA repair and recombination proteins [BR:
chre03400
]
IE160_09100 (ligA)
Enzymes [BR:
chre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IE160_09100 (ligA)
DNA replication proteins [BR:
chre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IE160_09100 (ligA)
DNA repair and recombination proteins [BR:
chre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IE160_09100 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IE160_09100 (ligA)
MMR (mismatch excision repair)
DNA ligase
IE160_09100 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IE160_09100 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
HHH
PTCB-BRCT
zf-IS66
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QOD93091
LinkDB
All DBs
Position
complement(1851453..1853795)
Genome browser
AA seq
780 aa
AA seq
DB search
MADSASDDPGTTTAATPVGELSRDAARAEVEALTSRILELRDAYYGRDTVLEDDASYDEK
LQRLAEIEREFPELQSQDSPTQTVGGRAESTLFDPVTHAERMLSLDNVFTPEEFAAWAAK
VERDANRAVHWLCELKIDGLALNLRYERGVLVSAATRGDGVVGEDVTENVRLVPGIPNHI
DDDSVPDLVEVRGEVFIPKAAFDALNGLQREAGEREFANPRNAASGSLRQKAEGKNAAQL
ARMHDRLSRLRMLVHGIGAWQNPPVAAQSEIYELLSRWGLPTSDHASVRDSAEGAAEFIT
HFGEHRDSVEHEIDGVVVKVDELALHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSV
GRTGRATPFAVMQKVRVAGSEVRQATLHNQDVVKLKGVLIGDTVVLRKAGDVIPEVLGPV
VELRDGTEREFVMPTHCPECGTELRPAKEGDVDLRCPNARSCPAQVRGRVEHIGSRGALD
IEGLGEIGAAALTQPEVPETPPLVTEAGLFALTLEQLLPIEVIVTDSETGLPKLEEDGEA
KRRSPFRRLRRAPLPGQEPTKSKPDPPYDPAGPFDGDEQFIVSSAATNLLDELEKAKKKP
LWRKLVSLSIRHVGPVAARALADHFGSLQHIREATKEELAAVDGVGPIIAEALVDWFAVD
WHVEIVESWQRAGLEWHTEGHPGPGAAAAAGGVLAGVTVVATGSLEGFTREGAQEAIIAA
GGKAASSVSKKTDFVAAGPGAGSKLAKAEQLGLRIIDAAQFAELVTQGPEALDEPAAAGE
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
gtggctgacagcgcttctgacgaccccggcacgacgaccgccgcgacacccgtcggcgag
ctgagccgcgacgcggcccgcgccgaggtcgaggcgctcacgagccgcatcctcgagctg
cgcgacgcctactacggccgcgacacggtgctcgaggacgacgcctcgtacgacgagaag
ttgcagcggctggcggagatcgagcgcgagttccccgagttgcagagtcaggacagcccg
acgcagacggtcggcggccgtgccgagtccacgctcttcgacccggtgacgcacgccgag
cgcatgctgagcctcgacaacgtgttcacgccggaggagttcgcggcgtgggcggcgaag
gtcgagcgcgacgcgaaccgcgcggtgcactggctgtgcgagctgaagatcgacgggctc
gccctcaacctgcgctacgagcgcggggtgctcgtcagcgcggcgacgcgtggcgacggg
gtcgtcggcgaggacgtgaccgagaacgtgcggctcgtgccgggcatcccgaaccacatc
gacgacgacagcgtgcccgacctcgtggaggtgcgcggcgaggtgttcattccgaaagcg
gcattcgatgccctcaacggcctgcagcgcgaggcgggcgagcgcgagttcgccaacccg
cgcaacgcggcgagcggctcgctgcggcagaaggcggagggcaagaatgcggcgcagctg
gcgcgcatgcacgatcggctgagccgattgcggatgctcgtccatggcatcggcgcgtgg
cagaacccgcccgtggcggcacagagcgagatctacgagctgctgtcgcgctgggggctg
ccgacgagcgaccacgcgagcgtgcgcgactcggcggagggtgccgccgagttcatcacc
cacttcggcgagcaccgcgacagcgtcgagcacgagatcgacggcgtcgtcgtcaaggtc
gacgagctggccctgcacgacgagctcggggcgacgagccgagccccgcgctgggcgatc
gcctacaagtacccgcccgagcaggtcaacacgaagctgctcgacatcgtcgtgagcgtc
ggccgcacgggccgcgcgacgcccttcgcggtcatgcagaaggtgcgcgtcgccggcagc
gaggtgcggcaggcgaccttgcacaatcaggacgtcgtcaagctcaagggcgtgctcatc
ggcgacaccgtggtgctgcgcaaggccggcgatgtgattcccgaagtgctcgggccggtc
gtcgagctgcgcgacggcaccgagcgcgagttcgtcatgcccacccactgcccggagtgc
ggcaccgagctgaggcccgcgaaggagggcgacgtcgacctgcgctgcccgaacgcgcgc
agctgcccggcgcaggtgcgcggccgtgtcgagcacatcggcagccgtggtgcactcgac
atcgagggcctgggcgagatcggcgccgcggcgctcacccagccggaggtgcccgagacg
ccgcctctcgtgaccgaggccgggttgttcgcgctgacgctcgagcagctgctgccgatc
gaggtcatcgtcaccgacagcgagacggggctgccgaagctcgaggaggacggcgaggcg
aaacggcgcagtccgttccgacggctgaggagagccccgctgcccggccaggagccgacg
aagtcgaagcccgacccgccctacgacccggcggggccgttcgacggcgacgagcagttc
atcgtctcctccgccgcgacgaatctgctcgacgagctcgagaaggccaagaagaagcct
ctgtggcgaaagctcgtgtcgctgtcgatccggcacgtgggccccgtcgccgcgcgggcg
ctcgccgaccacttcgggtcgcttcagcacatcagggaggcgacgaaggaggagctcgcc
gctgtcgacggcgtgggcccgatcatcgcagaggcgctcgtcgactggttcgccgtcgac
tggcacgtcgagatcgtcgagtcgtggcagagggcgggtctcgagtggcacacagagggc
caccccggccccggagcggcggccgccgccgggggagtgctcgcgggcgtcaccgtcgtg
gcgaccggcagcctcgagggcttcacgcgcgagggtgctcaggaggcgatcatcgccgcg
gggggcaaagcggcgagcagtgtgagcaagaagaccgacttcgtggccgctggcccgggc
gccggctcgaagctcgccaaagcggagcagctgggcctgcgcatcatcgatgcggcgcag
ttcgccgagctcgtcacgcaggggcccgaggcgctcgacgaaccagcggccgcgggggag
tag
DBGET
integrated database retrieval system
