Chryseobacterium sp. PCH239: KBP46_09040
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Entry
KBP46_09040 CDS
T11096
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chrh Chryseobacterium sp. PCH239
Pathway
chrh03030
DNA replication
chrh03410
Base excision repair
chrh03420
Nucleotide excision repair
chrh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chrh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KBP46_09040 (ligA)
03410 Base excision repair
KBP46_09040 (ligA)
03420 Nucleotide excision repair
KBP46_09040 (ligA)
03430 Mismatch repair
KBP46_09040 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chrh03032
]
KBP46_09040 (ligA)
03400 DNA repair and recombination proteins [BR:
chrh03400
]
KBP46_09040 (ligA)
Enzymes [BR:
chrh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KBP46_09040 (ligA)
DNA replication proteins [BR:
chrh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KBP46_09040 (ligA)
DNA repair and recombination proteins [BR:
chrh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KBP46_09040 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KBP46_09040 (ligA)
MMR (mismatch excision repair)
DNA ligase
KBP46_09040 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KBP46_09040 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
DUF7575
zf-IS66
UPF0758_N
Zn_ribbon_double
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
QWT87956
LinkDB
All DBs
Position
1990210..1992216
Genome browser
AA seq
668 aa
AA seq
DB search
MSENIQQKIEQLRKELHQHNENYYQLDTPTITDYEFDMLLEELQDLEARYPEFYDENSPT
VRVGGGVTKVFPTIQHKFRMYSLDNSYDFDDLEDWEKRIIKTIDDPVEFVAELKYDGASI
SILYENGKLSQAVTRGDGFQGDEITPNVRTISDIPLTLKGDFPAHFFMRGEIYLTRKNFD
KINKLREEEGLDPFMNPRNTASGSLKMQDSAEVRKRGLSSVLYQFISDEVPAETHWELLQ
KAQSWGFKTSQQAKLCKTMAEVQEFITFWDTERHNLPFEIDGIVLKVNSLQQQRQLGYTA
KSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDII
KKLDLHEHDFVYVEKGGEIIPKIVGVNTDKRTEESKEIEYIKHCPECGTELVKIEDQAIH
FCPNELHCPPQVVGRMIHYVSRKALNIDNLGSETIEQLYRERLIENPADFYVLTKEQLLP
LERMAEKSAQNIITGIEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFPTIEELKNATVE
ELCQVEDIGAKIAVSIVDFFQNSENVLMIERLKSYGVQLEKGESTNEVLSNVLEGKTFLF
TGKLSLFTRESAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTIEILDEQQ
FLDLIEKQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaacattcaacaaaagatagaacagcttcgtaaggaacttcaccagcataac
gaaaattactaccaactggatactcccaccattacagattatgaatttgatatgcttctg
gaggagctacaggatctggaagccaggtatcccgaattctatgatgaaaattctcctacc
gttcgtgtaggtggcggtgttaccaaagttttccctacgattcagcataagttcaggatg
tattctctggacaattcctatgattttgacgatcttgaagactgggaaaagagaatcatc
aaaacgattgacgatccggtagaattcgttgctgagctgaaatacgacggtgcttccatt
tctattctttatgaaaacggtaagctttcacaggctgtgacccgtggtgacggtttccag
ggtgatgagattaccccgaatgtacgtaccatttcagatattcctctgactttaaaaggt
gatttccctgctcatttttttatgcgtggtgaaatttatctgaccagaaaaaactttgac
aaaatcaataaacttcgtgaggaagaagggcttgatcctttcatgaatccaagaaatact
gccagcggaagtttgaaaatgcaggacagcgctgaggtaagaaagcgtggactttcttcc
gtattataccagtttatttctgatgaagttcctgcggaaacccattgggaactgcttcag
aaagctcagagctggggcttcaaaacctcccagcaggccaaattatgtaaaacaatggct
gaggtacaggaatttattactttctgggacacagaacgtcataatcttccttttgaaatt
gatggtattgttttaaaagtgaattcactacagcagcagagacaacttggctatacggcc
aaatctccgcgttgggctatggcttataaatttaaagcggaaaaagtagaaacagaactt
caaagcgtttcttatcaggtgggaagaaccggagctattactcctgttgctaatcttaaa
cctgttttactggccggaaccattgtgaaaagagcttctctgcacaatgaagatatcatc
aaaaagctggatcttcatgaacatgatttcgtgtatgtagaaaaaggaggtgaaattatt
ccgaaaatcgtaggcgtaaacacagataaaagaactgaagaaagcaaagaaattgaatat
atcaaacattgtcctgaatgtggtaccgagctggtaaaaattgaggatcaggccatccat
ttctgtccgaacgagcttcactgcccgccacaggttgtaggaagaatgatccactatgtt
tccagaaaagctttgaatattgataatcttggaagtgaaacgattgaacagctgtacaga
gaaagactgattgaaaatcctgccgacttctatgttttaacaaaagaacaacttcttcca
ctcgaaagaatggctgagaaatcggctcagaatatcatcacaggaattgaaaaatccaaa
gaaattccttttgaaaaagttttatacggaatcgggatcaaacacgtgggggaaacagtt
gccaagaaactggttaaaaacttcccaacgattgaagaattgaaaaatgcaaccgtagaa
gagctctgccaggtagaagacatcggagctaaaattgcagtaagcattgtcgatttcttc
cagaattctgaaaacgtattgatgatcgaacgattgaaatcttacggagtacagcttgaa
aaaggagaaagtaccaatgaggttctatccaatgttctggaaggaaaaactttcctgttc
accggaaaattgtcattatttaccagagaatctgctgaggaaatggtagaaaagcatggc
ggaaaaaatatttctgcagtttcaaaaaacctcaactatcttgtagtaggtgaaaaagca
ggaagtaagctgaaaaaagcacaggatatcggaacaattgaaatcctggatgagcaacag
tttctggatttgattgagaaacagtaa
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