Chryseobacterium sp. POL2: G6R40_00775
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Entry
G6R40_00775 CDS
T11017
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chrp Chryseobacterium sp. POL2
Pathway
chrp03030
DNA replication
chrp03410
Base excision repair
chrp03420
Nucleotide excision repair
chrp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chrp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G6R40_00775 (ligA)
03410 Base excision repair
G6R40_00775 (ligA)
03420 Nucleotide excision repair
G6R40_00775 (ligA)
03430 Mismatch repair
G6R40_00775 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chrp03032
]
G6R40_00775 (ligA)
03400 DNA repair and recombination proteins [BR:
chrp03400
]
G6R40_00775 (ligA)
Enzymes [BR:
chrp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G6R40_00775 (ligA)
DNA replication proteins [BR:
chrp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G6R40_00775 (ligA)
DNA repair and recombination proteins [BR:
chrp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G6R40_00775 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G6R40_00775 (ligA)
MMR (mismatch excision repair)
DNA ligase
G6R40_00775 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G6R40_00775 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
RNA_lig_T4_1
DNA_pol_lambd_f
PTCB-BRCT
RNA_ligase
5_3_exonuc
Zn_ribbon_3
DUF7575
Motif
Other DBs
NCBI-ProteinID:
QIG88274
UniProt:
A0A6G6YDH6
LinkDB
All DBs
Position
complement(170468..172477)
Genome browser
AA seq
669 aa
AA seq
DB search
MSENIQLKIEELREELHQHNYNYYILDEPSISDFEFDTKLKELQDLEKQHPEFADANSPT
LRVGGGVTKNFPTVLHQFRMYSLDNSYDFNDLEDWEKRIIKTIDEPVEFVAELKYDGASI
SILYENGKLSQAVTRGDGFQGDEITNNVRTISDVPLKLKGDFPEKFFMRGEIYLTRKNFD
KINQQREEEGLDLFMNPRNTASGSLKMQDSAEVRKRGLSAVLYQYIAEEFPAQTHWDVLS
KAKNWGFKVSEDQAKLCTSLDDVKNFINFWDAERHNLPFEIDGIVIKVNSLQQQKQLGYT
AKSPRWAMSYKFKAEKVETELLSVSYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDI
IKKLDLHENDFVYVEKGGEIIPKIVGVNTEKRTSESREIEYIKNCPECGTELVKIEDQAI
HFCPNDLHCPPQVVGRMIHYVSRKALNIENLGSETIEQLYREKLIENPADFYALTKEQLL
PLDRMAEKSAQNIIDGIEKSKQIPFEKVLYGIGIKHVGETVAKKLVKNFATIEDLKNATI
EELTQVEDIGGKIAVSIVDFFQNPENNLMIERLKNYGVQLEKGESTQEVLSNVLEGKTFL
FTGKLSLFTREQAEEMVEKHNGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTITILDEQ
EFLDLINEG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaacatccaattgaagatagaagaactaagagaagaactccaccaacacaat
tataattactatattttagacgaaccaagcatttcagattttgaatttgatacaaagctt
aaagaacttcaagatttagaaaaacaacatcctgaatttgcagacgctaattctccaact
ttgcgtgttggtggcggtgtaaccaaaaatttcccgacagttctgcatcaattcagaatg
tattctttggataattcttacgattttaatgatcttgaagattgggaaaaacgaattatt
aaaaccattgatgagcccgtagaatttgttgctgaattaaaatacgacggcgcttctatc
tctattttatatgaaaacggaaaactttctcaagctgtaacgcgtggtgatggtttccaa
ggggacgaaatcacgaataatgtgagaactatttcggatgttcctttaaaattgaaaggt
gattttcctgaaaaattcttcatgcgcggtgaaatttatttaacgagaaaaaatttcgat
aaaattaaccaacagcgtgaagaagaaggtttagacttgtttatgaacccaagaaataca
gcaagtggaagtttaaaaatgcaagattctgcggaggttagaaaacgtggactttcggca
gttttatatcaatatatcgcagaggaatttcctgctcaaacccattgggatgttttatct
aaggctaaaaactggggatttaaggtatctgaagatcaagcaaaattgtgcacaagttta
gatgatgttaaaaatttcatcaacttttgggatgctgagcgtcacaatttaccttttgaa
atagatggaattgtgataaaagtaaattctcttcaacagcagaaacaattgggttacacc
gcaaaatctccgcgttgggcgatgtcttataaattcaaagctgaaaaagtagaaacagaa
cttttaagtgtttcttatcaagtcggaagaactggagccataacccctgttgctaatttg
aaacctgttttgttggccggaaccatcgtaaaaagggcttctttgcataatgaagacatc
ataaaaaaattggacttgcacgaaaatgattttgtgtatgtagaaaaaggaggtgaaatt
attcctaaaattgttggcgtaaatacagaaaaaaggacgtctgaaagtcgagaaatagaa
tacataaaaaattgtccagagtgcggaactgaattggtgaaaattgaagatcaagccata
catttttgcccaaacgatctgcattgtccgccacaagttgtaggaagaatgatacattat
gtttctagaaaagctttgaatatagaaaatctgggcagcgaaaccatagaacagctttac
cgagaaaaactgattgaaaatcctgccgacttttatgctttaaccaaagaacaactgctt
ccattggatagaatggcggagaaatctgctcaaaatattattgatggtatcgaaaaatcc
aaacaaattccatttgaaaaagttttatacggaatcggaattaaacatgtaggcgaaacc
gttgctaaaaaattagttaaaaattttgctacaatcgaagatttgaaaaatgctacaatt
gaagaacttacacaagtggaagacatcggtgggaaaattgccgtaagcatagttgatttc
ttccaaaatcctgagaataatcttatgattgaacgcttgaaaaattatggtgttcaattg
gaaaaaggggaaagtacgcaggaagttttaagcaatgttttggaagggaaaaccttttta
tttactggtaaattatcgcttttcacgcgcgaacaagccgaagaaatggtggaaaaacac
aatggaaaaaatatttcagccgtttctaaaaatttaaattatttggttgtcggtgaaaaa
gcaggaagtaaattgaaaaaagctcaggatattgggacaatcaccattttggatgagcaa
gaatttttggatttgattaatgaaggataa
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