Chryseobacterium sp. PMSZPI: ACL0VS_14480
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Entry
ACL0VS_14480 CDS
T11402
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chrr Chryseobacterium sp. PMSZPI
Pathway
chrr03030
DNA replication
chrr03410
Base excision repair
chrr03420
Nucleotide excision repair
chrr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chrr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACL0VS_14480 (ligA)
03410 Base excision repair
ACL0VS_14480 (ligA)
03420 Nucleotide excision repair
ACL0VS_14480 (ligA)
03430 Mismatch repair
ACL0VS_14480 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chrr03032
]
ACL0VS_14480 (ligA)
03400 DNA repair and recombination proteins [BR:
chrr03400
]
ACL0VS_14480 (ligA)
Enzymes [BR:
chrr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACL0VS_14480 (ligA)
DNA replication proteins [BR:
chrr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACL0VS_14480 (ligA)
DNA repair and recombination proteins [BR:
chrr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACL0VS_14480 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACL0VS_14480 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACL0VS_14480 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACL0VS_14480 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XNN37133
LinkDB
All DBs
Position
complement(3319929..3321935)
Genome browser
AA seq
668 aa
AA seq
DB search
MSENIQQKIEQLRKELHQHNENYYLLDTPTITDYEFDMLLQELQDLEAKHPEFYDENSPT
MRVGGGITKVFPTIQHKFRMYSLDNSYDFDDLEDWEKRIIKTINDPVEFVAELKYDGASI
SILYENGKLTQAVTRGDGFQGDEITPNVRTISDIPLTLKGDFPSHFFMRGEIYLTRKNFD
KLNQLREEEGLDPFMNPRNTASGSLKMQDSAEVRKRGLSSVLYQFISEETPAETHWELLQ
KAKSWGFKTSQQAKLCKTLDEVKEFITFWDTERHNLPFEIDGIVLKVNSLQQQRQLGYTA
KSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDII
KKLDLHENDFVYVEKGGEIIPKIVGVNTDKRTEESKEIEYIKHCPECGTELVKIEDQAIH
FCPNELHCPPQVVGRMIHYVSRKALNIENLGSETIEQLYREKLVENPADFYVLTKEQLLP
LERMAEKSAQNIITGIEKSKDIPFEKVLYGIGIKHVGETVAKKLVKNFPTVEELKNASVE
ELCQVEDIGAKIAVSIVEFFQNSENVLMIERLKNYGVQLEKGENTNEVLSNVLEGKTFLF
TGKLSLFTRESAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTIEILDEQQ
FLDLVEKQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaacattcaacaaaagatagaacagcttcgcaaggagcttcatcaacataac
gaaaattattacctactggatactcctaccattacagattatgagttcgatatgcttctg
caggaacttcaggatctggaggccaaacaccctgaattctatgatgaaaactcacccaca
atgcgtgtaggtggtggaattacaaaagttttcccaactattcaacataaattcagaatg
tattctttggataattcttacgattttgatgatctggaggattgggagaaaaggattatc
aaaacaatcaatgacccggttgaatttgttgccgaactaaaatatgacggagcctctatt
tccattttatatgaaaacggaaaactgacacaggctgtaacccgtggtgatgggttccag
ggagatgaaatcactccgaatgtccgtacgatttcagatatccctctgactttaaaaggt
gatttcccatctcatttctttatgcgtggagaaatttatctgaccagaaaaaactttgat
aaacttaatcaacttcgtgaagaggaaggattagatccctttatgaatccaagaaataca
gctagcggaagtttgaaaatgcaagacagtgctgaggtaagaaaacgtggattatcttcc
gtactatatcaatttatctctgaagaaactccggcagaaacccactgggaacttcttcaa
aaggcgaaaagctggggattcaaaacttcccaacaggccaagctatgcaaaacattggat
gaagtaaaagaatttatcactttctgggatacagaacgccataaccttccttttgaaatt
gacggtattgtattaaaagtaaattctctgcaacaacaaagacagcttggatatacggca
aagtctccacgttgggcaatggcttataaatttaaagctgaaaaggtagaaacagagctt
caaagcgtttcttatcaggtaggaagaacaggagccatcactccggttgccaatcttaaa
cctgttttgctagccggaactatcgtaaaaagagcttcccttcacaacgaagatatcatc
aaaaaactggatctgcacgagaatgactttgtatatgtagaaaaaggaggtgaaattatt
ccaaagattgtaggcgtaaatacggacaagagaaccgaagaaagtaaagagatagaatac
atcaaacactgtccggaatgtggaacagagctggtaaaaattgaggatcaggccattcat
ttctgcccaaatgagcttcattgcccgccacaggttgtaggaagaatgattcattatgtt
tccagaaaagctttaaatattgaaaatctaggaagtgaaaccattgaacagctttacaga
gaaaagctggttgaaaatcccgctgatttttatgttttaacaaaagaacaacttcttcca
ttggaaagaatggctgaaaagtcggctcaaaatatcatcacaggaattgaaaaatcaaaa
gatattccgtttgaaaaagtgttgtatggaattggaattaaacacgtaggagaaacggtt
gccaaaaaactggtaaagaacttccctactgtagaggaattgaaaaatgcttctgtagaa
gaactttgccaggtagaagatatcggagctaaaattgcagtgagtattgttgaatttttc
caaaactcagaaaatgttttgatgattgaacgtttaaaaaactatggtgtacaacttgaa
aaaggagaaaacactaatgaagttttgtccaatgttctggaaggaaaaacattccttttt
acaggaaaattatctttattcaccagagaatctgctgaggaaatggtagaaaaacatggc
ggaaaaaatatttctgcggtttcgaaaaaccttaattaccttgttgtaggtgaaaaagcc
ggaagcaagttgaaaaaagcacaggatatcggaactatcgaaattttggacgaacaacaa
tttttagatttggttgagaaacaataa
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