Chryseobacterium sp. Y16C: MKS83_18720
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Entry
MKS83_18720 CDS
T11021
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chrt Chryseobacterium sp. Y16C
Pathway
chrt03030
DNA replication
chrt03410
Base excision repair
chrt03420
Nucleotide excision repair
chrt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MKS83_18720 (ligA)
03410 Base excision repair
MKS83_18720 (ligA)
03420 Nucleotide excision repair
MKS83_18720 (ligA)
03430 Mismatch repair
MKS83_18720 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chrt03032
]
MKS83_18720 (ligA)
03400 DNA repair and recombination proteins [BR:
chrt03400
]
MKS83_18720 (ligA)
Enzymes [BR:
chrt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MKS83_18720 (ligA)
DNA replication proteins [BR:
chrt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MKS83_18720 (ligA)
DNA repair and recombination proteins [BR:
chrt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MKS83_18720 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MKS83_18720 (ligA)
MMR (mismatch excision repair)
DNA ligase
MKS83_18720 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MKS83_18720 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
RNA_ligase
BRCT_2
UPF0758_N
DUF7575
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
UMQ41409
LinkDB
All DBs
Position
complement(4126713..4128716)
Genome browser
AA seq
667 aa
AA seq
DB search
MSENIQQKIEELRKELHQHNENYYLLDTPTISDFDFDMLLEELRDLEAKYPEFYDENSPT
VRIGGGITKVFPTVQHKFRMYSLDNSYDFNDLEDWEKRIIKTIDEPVEFVAELKYDGASI
SILYENGKLAQAVTRGDGFQGDEITANVRTISDIPLKLKGDFPEHFFMRGEIYLTRKNFD
KINKLREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSSVLYQFISEDIPAESHWELLE
KAKSWGFKTSQQAKLCTTLDEVKEFINFWDLERHNLPFEIDGIVLKVNSLKQQRQLGYTA
KSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDII
KKLDLHEHDFVYVEKGGEIIPKIVGVNTEKRTDESKEIEYIKDCPECGTELVKIEDQAIH
FCPNELHCPPQVVGRMIHYVSRKALNIENLGSETIEQLYREKLIENPADFYTLTKEQLLP
LERMAEKSAQNIISGIEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFPTIEELKNATVE
ELCQVEDIGTKIAVSIVDFFANSENILIIERLKSYGVQLEKGESTNEVLSNALEGKTFLF
TGKLSLFTRESAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTIEILDEQQ
FLDLINS
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaaacattcaacaaaaaatagaggaacttcgtaaagagcttcatcagcataat
gaaaattattatcttcttgatactccgacaatttcagattttgattttgatatgctgttg
gaagaacttcgtgatctggaagcaaaataccctgagttctacgatgaaaactctccaaca
gtacgtattggtggtggaattaccaaagttttcccaacagttcagcataaattcagaatg
tattctctggacaattcttatgattttaacgatcttgaagactgggaaaaaagaattatc
aaaaccattgatgaacctgtagagtttgttgctgagcttaaatatgacggggcctccatt
tctattttgtatgaaaacggaaaattagctcaggctgttactcgtggagacggttttcag
ggcgacgaaattacggcaaacgtccgaaccatttcggatattccattgaaattaaagggt
gattttcctgaacatttctttatgcgtggtgaaatttacctgacgagaaaaaacttcgat
aaaatcaataaattacgtgaggaagaaggccttgatcctttcatgaatccaagaaataca
gccagtggaagtttaaaaatgcaggacagtggtgaagtgaggaaacgcggactttcctca
gttttatatcaatttatttccgaagatattccagcagaatcacattgggaattgcttgaa
aaggcaaaatcctggggattcaaaacttctcaacaggcaaaactgtgcacgactttagat
gaggtgaaagaattcattaatttctgggatcttgaaagacataatttacctttcgaaatt
gacggtattgttttaaaagtcaattctttaaaacaacagagacaacttgggtatacggct
aagtctccgcgttgggcaatggcttataaatttaaggctgaaaaagtggaaaccgaatta
caaagcgtttcttatcaggtgggaagaacgggagccatcactccggttgccaatctgaaa
cctgttttactggccggaaccattgtaaaaagagcttccctacataatgaagatattatc
aagaaattagatctgcatgagcatgattttgtgtatgtagaaaaaggaggtgaaatcatt
ccaaaaattgttggagtcaataccgagaaaagaactgatgaaagcaaagagatcgaatac
atcaaagactgcccagaatgtggaacagaattagtaaaaattgaagaccaggcgattcat
ttctgtccgaatgagcttcattgtccgccacaggttgtaggaagaatgattcattatgtt
tcaagaaaagccttaaatattgagaatttgggaagcgaaaccatcgagcagctttacaga
gaaaaattgattgaaaaccctgcagacttttatactttaaccaaagaacagcttcttcca
cttgaaagaatggcggaaaaatctgcacagaacatcatttcaggaatcgaaaaatcaaaa
gaaattccttttgaaaaggtattgtatggaattggaataaaacatgttggtgaaacggtc
gctaaaaaactggttaagaacttcccaactattgaagaattgaagaatgctaccgttgaa
gagctttgtcaagtggaagacatcgggacaaaaatcgcagtgagtattgtagacttcttt
gccaattctgagaatattttaataatcgaaagactaaaatcctatggagttcagctagaa
aaaggagaaagtaccaatgaagttttatccaatgctttagaaggaaaaaccttccttttt
accggaaaactctctttattcaccagagaatcagcagaagaaatggtggaaaaacacggc
ggaaaaaacatttctgctgtgtctaaaaaccttaattatctcgtagtaggcgaaaaagct
ggaagcaaattgaaaaaagcccaggatatcggaaccattgaaatcctagatgaacagcag
tttttggatctgattaattcataa
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