Chlamydia psittaci 01DC11: CPS0A_0668
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Entry
CPS0A_0668 CDS
T01860
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chs
Chlamydia psittaci 01DC11
Pathway
chs03030
DNA replication
chs03410
Base excision repair
chs03420
Nucleotide excision repair
chs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPS0A_0668 (ligA)
03410 Base excision repair
CPS0A_0668 (ligA)
03420 Nucleotide excision repair
CPS0A_0668 (ligA)
03430 Mismatch repair
CPS0A_0668 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chs03032
]
CPS0A_0668 (ligA)
03400 DNA repair and recombination proteins [BR:
chs03400
]
CPS0A_0668 (ligA)
Enzymes [BR:
chs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CPS0A_0668 (ligA)
DNA replication proteins [BR:
chs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CPS0A_0668 (ligA)
DNA repair and recombination proteins [BR:
chs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CPS0A_0668 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPS0A_0668 (ligA)
MMR (mismatch excision repair)
DNA ligase
CPS0A_0668 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPS0A_0668 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
HHH_3
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AEG86630
LinkDB
All DBs
Position
complement(699641..701623)
Genome browser
AA seq
660 aa
AA seq
DB search
MQSTYSREQYLSLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLWSP
SMRLGDRASGSFPIVAHAHPMLSIANAYTLEELYEFFSRMEKALGYTPKYTLEIKIDGIA
VALRYEQRVLLQALSRGNGRKGEDITANIRTIRTLPLRLSKEAPEFLEVRGEVFFSRATF
RQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEAAQRNLEISIYGSLAEENKRSHYENLL
LCREWGFPVLGQPRQCQTIDEVVASLHEIEALRDQLPMEIDGVVIKVDDIEDQKVLGMTA
KHYRWALAYKYAPERAETILEDILVQVGRTGVLTPVAKLRPVVLSGSRVSRASLYNEDEI
ERKDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGSQPWVMPEYCPVCHGKVTRESDKVSV
RCTNPLCSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFDLGCIHRRCDIFQITEEDLRHV
PGFKDKSIRNVLKSIEKAKSVPLDRFLTALGIPYVGIGGANALAQHFLSLESVMSASLDD
LKSVEGIGDKVAESIVAYFNQPEHREEIQIMLSLGVHVLPYRRESSSCLGKTFVITGSLE
KLTRSEAETYIRNCGGKVGSSVSKNTDYLVVGKDPGSKLQKAQELEIPILSEDELLKILY
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagtacatattccagagaacaatatctctctctgtgtaaagatatcgaagaagat
gattatcgctattatgttcttcataatcccacaatctcagattatgactatgatatgaaa
atgcggcagcttctttctatagaagcgcagcatcctgaatggaaggtattatggtctcca
tcgatgcgtcttggggatcgagcttcaggaagctttcctattgtagctcatgcccacccc
atgctttctattgctaatgcctatactttagaagagctttatgagttcttttcccgtatg
gagaaagcgttggggtataccccgaaatacactctagaaataaaaatagatggtattgcc
gtagctcttcgttatgagcagagagtccttttacaagctttaagccgtgggaatggacgt
aagggagaggatatcacagcaaatatccgtacgatacgcacgcttcccctacgtttatca
aaagaggctccagaatttctagaagttcgaggtgaagtatttttttcacgagcaactttt
cgtcagattaatgcggcacaaaggcaagcggagaaacctgaatttgctaatccaagaaat
gctgctggtggcactttgaaattgttgtctgctaaggaagcagcacaaagaaacttagaa
atttctatttatggatcgttggcagaagagaataagcgatcacattatgagaatctcctg
ttgtgtagagagtggggattccccgtattgggtcagccacgtcaatgccaaactatcgat
gaagtcgtcgcctctctccatgagatagaagctttgcgagatcaacttcccatggaaatc
gatggtgtggtgatcaaagtagatgatatagaagatcaaaaagtcttgggaatgacggcg
aagcattatcgctgggcactcgcatacaagtatgcgccagaacgcgctgaaactatttta
gaagatatcttagttcaagtaggcagaacgggagtattgaccccagtggctaagctgcga
cctgtagttttgtcaggatctagagtttctagggcttctctatacaatgaagatgaaatt
gagagaaaagacatccgtataggtgacaccgtatatgtagagaagggcggagaaattatt
cctcaagttgttggtgtttgcctggaaaagcgtccggaaggctcacagccttgggttatg
cccgaatactgtcctgtgtgtcatgggaaggtaactcgcgaatccgataaagtttctgtt
cgttgtacgaaccccctgtgttctgcaggagttattgaaaaaatccgctttttttgtgga
agagacgctttagatattgatcatcttggtgaaaaggttgttacgaagctatttgattta
gggtgtattcatcgacgctgtgatatttttcaaatcactgaagaagatctccgccatgtt
ccaggatttaaagataaatccataagaaacgtccttaaaagtatagagaaagctaaaagt
gtgcctttagatcgttttcttactgctttgggtattccttatgtgggtataggcggagcc
aacgctcttgcacaacattttctttctttagagtctgtgatgtctgcctctttggatgat
ctaaaatctgtagagggaattggagataaagttgcagaatctatagttgcttattttaat
caaccagaacatcgcgaagagattcaaataatgctttctctaggggtgcatgttttacct
taccgcagggaaagttcttcgtgtttagggaaaaccttcgtaattacgggcagtcttgaa
aaattgacgagatccgaagcagaaacttacattcgcaattgtggaggtaaggtaggttct
tccgtgtctaaaaacaccgactatcttgttgtgggcaaggatcctgggtccaagttacaa
aaggcccaagaactggaaattcccattcttagtgaggatgagctgttaaaaattctttac
taa
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