Campylobacter hepaticus: A2J15_003690
Help
Entry
A2J15_003690 CDS
T05589
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chw
Campylobacter hepaticus
Pathway
chw03030
DNA replication
chw03410
Base excision repair
chw03420
Nucleotide excision repair
chw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A2J15_003690 (ligA)
03410 Base excision repair
A2J15_003690 (ligA)
03420 Nucleotide excision repair
A2J15_003690 (ligA)
03430 Mismatch repair
A2J15_003690 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chw03032
]
A2J15_003690 (ligA)
03400 DNA repair and recombination proteins [BR:
chw03400
]
A2J15_003690 (ligA)
Enzymes [BR:
chw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A2J15_003690 (ligA)
DNA replication proteins [BR:
chw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A2J15_003690 (ligA)
DNA repair and recombination proteins [BR:
chw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A2J15_003690 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A2J15_003690 (ligA)
MMR (mismatch excision repair)
DNA ligase
A2J15_003690 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A2J15_003690 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
BRCT_2
Nlig-Ia
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AXP08810
UniProt:
A0A6A7JTG4
LinkDB
All DBs
Position
complement(744833..746776)
Genome browser
AA seq
647 aa
AA seq
DB search
MTKEQYLEKVKLANLWMRAYYEKDEPLASDEEYDALIRELRAFEKINENEIAKDSPTQKV
APIIQSEFKKLAHLKRMWSMEDVFDETELRAWVKRVKNEKNFFIEPKFDGASLNLLYEKG
KLISGATRGDGEIGEDITLNVFEIDSIPKNIPYKEKIEIRGEVVILKEDFEKINAKRASL
NQALFANPRNAASGSLRQLDTSVTRDRNLKFYPWGVGENSLNFKTHSQIMSFIRELGFLK
DEFIKVCKDVDEVLKAYKELLALREQKAMMMDGMVVRIDDLALCDELAYTVKFPKFMVAF
KFPALEKTTRLIGVNLQVGRSGVITPVAILEAVNLDGVMVKSATLHNFDEIARLDVKIND
FVSVIRSGDVIPKITKVFKERRDGLEIDITRPQFCPTCHNELLDEGTLLKCQNIDCKDRL
VNSIIHFVSKKCLNIEGLGENIVELLYKNKKITTLESIFHLEFADFEGLEGFKQKKINNL
LNSIKNAKECELFRFINALGIEHIGEVAAKKLSLSFGLQWHKQDFQAYMSLEGFGEQMAL
SLCEFTRVNRLRIDEFYKLLNLKVEARQIINNSTIFGKTFVITGTLSRPRDEIKALIESF
GAKVSSSLSKKTDYVLFGQEAGSKLSKAQDLGVRCINENAFHKLIKK
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagagcagtatttagaaaaagtaaaactagcaaatttatggatgagggcgtat
tatgaaaaagatgagcctttagcaagtgatgaagaatatgatgctttaatcagagaatta
agagcttttgaaaagataaatgaaaatgagattgcaaaagattctccaacgcaaaaagtt
gcacctattatacaaagtgaatttaaaaaacttgcccatttaaaacgcatgtggtccatg
gaagatgtttttgacgaaacggagcttagagcatgggtaaaacgtgtaaaaaatgagaaa
aatttttttatagagcctaaatttgatggggcaagtttaaatttgctttatgaaaaaggt
aaattaataagcggtgcaacaaggggtgatggtgaaataggtgaagatatcactcttaat
gtttttgagattgatagtattcctaaaaatatcccttataaagaaaagatagaaattcgt
ggtgaagtagttattttaaaagaagattttgaaaaaatcaatgctaaaagagcgagttta
aatcaggctttatttgctaatcctcgcaatgcagcaagtgggagtttaaggcaattagat
acaagtgttacaagggatagaaatttaaaattttatccttggggggtaggagaaaatagt
ttaaattttaaaactcatagtcaaattatgagttttataagagaacttggttttttaaaa
gatgaatttattaaagtttgtaaagatgttgacgaggttttaaaagcttataaagagctt
ttagctttaagagaacaaaaagctatgatgatggatggaatggttgtaagaattgatgat
cttgcgctttgtgatgagcttgcttatacggtaaaatttccaaagtttatggtagctttt
aaatttcctgctcttgaaaaaacaacgcgtttaataggtgtgaatttacaagtaggaaga
agtggagtgattactcctgtagctattttagaagcagtaaatttagatggagttatggta
aaatcagcaactttgcataattttgatgagattgcaaggcttgatgttaaaattaatgat
tttgttagtgttataagaagtggggatgtgataccaaaaatcactaaggtgtttaaagaa
cgtcgagatggtttagaaattgatattactcgtcctcaattttgtcctacttgtcataat
gagcttttagatgaaggaactttgttaaaatgtcaaaatatagactgcaaggataggctt
gtaaattctatcattcattttgtttctaaaaagtgtttaaatatagaaggtttgggagaa
aatattgttgagcttttatataaaaataaaaaaattactacacttgagagtatttttcac
ttagaatttgctgattttgaaggtttggaaggttttaaacaaaaaaagattaataatctt
ttaaattctattaaaaatgcaaaagaatgtgagctttttcgttttattaatgctttgggt
attgagcatataggtgaagttgccgctaagaaattaagcttgagttttggtttgcaatgg
cataaacaagattttcaagcttatatgagtttagaaggttttggtgagcaaatggcttta
agcctttgtgaatttacacgggtaaatcgtttaagaattgatgagttttataaactttta
aatttgaaagtagaagctaggcaaattataaataatagtacaatttttggaaaaaccttt
gttattacaggtacgctttcacgtcctagagatgaaataaaagccttaatagaaagtttt
ggagctaaggtaagttcttcgctttctaaaaaaacagattatgtgctttttggccaagaa
gcaggatcaaaattaagtaaagctcaagatcttggtgtaaggtgtattaatgagaacgct
tttcataagcttattaaaaaatag
DBGET
integrated database retrieval system
