Capra hircus (goat): 102186419
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Entry
102186419 CDS
T02910
Symbol
TARDBP
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
chx
Capra hircus (goat)
Pathway
chx03015
mRNA surveillance pathway
chx05014
Amyotrophic lateral sclerosis
chx05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102186419 (TARDBP)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
102186419 (TARDBP)
05022 Pathways of neurodegeneration - multiple diseases
102186419 (TARDBP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chx03019
]
102186419 (TARDBP)
Messenger RNA biogenesis [BR:
chx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
102186419 (TARDBP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
RL
RRM_5
Motif
Other DBs
NCBI-GeneID:
102186419
NCBI-ProteinID:
XP_005690745
UniProt:
A0A452G5Y7
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Position
16:complement(41097063..41103700)
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AA seq
414 aa
AA seq
DB search
MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
KDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFVTFADDQVA
QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQSQGNMQ
REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatatattcgggtaaccgaagatgagaatgacgagcccattgaaataccatcg
gaagacgatgggacagtgctgctgtccacggttacagcccagtttccaggggcatgtggg
ctgcgctaccggaatccagtgtctcagtgtatgagaggtgtccgtctggtagaaggaatt
ctgcacgcccccgatgcgggctgggggaatctggtatatgttgtcaactatcccaaagat
aacaaaagaaaaatggatgaaactgatgcttcatcagcagtgaaagtgaaaagagcggtc
cagaaaacatctgatttaatagtgttgggtctcccatggaaaacaactgaacaggatctg
aaagattacttcagtacctttggagaagttcttatggttcaggtcaagaaggatattaaa
actggtcattcaaaagggtttggctttgttcgcttcacggaatatgaaacccaggtgaaa
gtaatgtcacaacgacatatgatagatggacgatggtgtgactgtaaacttccaaattct
aagcaaagcccagatgagcctttgagaagcagaaaggtgtttgttgggcgttgtacagag
gacatgactgctgatgaactgcggcagttcttttgccagtacggagaagtggtagatgtc
ttcatccccaaaccgttcagggcttttgcctttgttacgtttgcagatgatcaggttgcc
cagtctctttgtggagaggacttgatcattaaaggaatcagcgtacatatatccaatgct
gaacctaagcacaatagcaatagacagttagaaagaagtggaagatttggtggtaatcca
ggtggctttgggaatcagggtggatttggaaatagtcgagggggtggagcgggtttggga
aacaatcagggtagtaatatgggtggagggatgaactttggtgcttttagcattaaccca
gcaatgatggctgcagctcaggctgctctgcagagcagctggggtatgatgggcatgtta
gccagtcagcagaaccagtctggcccatcaggtaataaccaaagccaaggcaacatgcag
agggagccaaatcaggcttttggttctggaaataactcttacagtggttctaattcaggt
gcagcgattggttggggatcagcatcaaatgcaggatcaggcagtggttttaatggaggc
tttggctctagcatggattctaagtcttctggctggggaatgtag
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