Carboxydothermus hydrogenoformans: CHY_1100
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Entry
CHY_1100 CDS
T00287
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chy
Carboxydothermus hydrogenoformans
Pathway
chy03030
DNA replication
chy03410
Base excision repair
chy03420
Nucleotide excision repair
chy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHY_1100 (ligA)
03410 Base excision repair
CHY_1100 (ligA)
03420 Nucleotide excision repair
CHY_1100 (ligA)
03430 Mismatch repair
CHY_1100 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chy03032
]
CHY_1100 (ligA)
03400 DNA repair and recombination proteins [BR:
chy03400
]
CHY_1100 (ligA)
Enzymes [BR:
chy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CHY_1100 (ligA)
DNA replication proteins [BR:
chy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CHY_1100 (ligA)
DNA repair and recombination proteins [BR:
chy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CHY_1100 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CHY_1100 (ligA)
MMR (mismatch excision repair)
DNA ligase
CHY_1100 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CHY_1100 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
HHH_8
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ABB14207
UniProt:
Q3AD38
LinkDB
All DBs
Position
974637..976631
Genome browser
AA seq
664 aa
AA seq
DB search
MDKEAVKKRIEELRALLHYHNYRYYVLDQPEISDAEYDRMLRELISLEQQYPEFITPDSP
SQRVGGEVAKEFREVAHLKPMYSLDNAFGPEDLKEFDRRVRSLLPGQEVEYEVELKIDGL
AISLVYENGVLVRGATRGNGTTGEDITANVKTIKAIPLKLRNPIPLLEVRGEAYMPKESF
ARLNEQREERGEPLFANPRNAAAGSLRQLDPKVTAERDLSAFMYAIGEVQGYEPKTQAEL
MEWLSELGFKVNPYREVFNNIDDVINYCQSWHEKRFSLPYVIDGLVIKVNSLAQQEALGF
TAKSPRWAIAYKFPAEIAETRLKDIIVRVGRTGVLTPTAIFEPVSLAGTTVTRASLHNED
YIREKDIRIGDIIRVQKAGEIIPEVVEVVKEKRTGAEKEFVMPDTCPVCQGKAVRLPGEA
AWRCTNASCPAQLKEGIVHFASRGAMNIEGLGPAVAELLLEAGLIHNYADLYYLSAEEVA
RLPRMGKKSAENLINAIEKSKQNSLERLIYGLGIRLVGEKAARDLAVHFKELDKLIAAGE
EEIMAIPSVGPKMAASIKAFFAQKENLELIEKLKAAGVNTKYLAEVRDNRLEGLTFVLTG
TLSSFTRKEAEQLILSLGGKVSSSVSKKTSYVVVGEDPGSKLTKAKELGIPILTEEEFRQ
MVMS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggataaggaagctgtcaaaaagcgtatcgaagaacttagggcccttcttcattatcac
aactaccggtattatgttttggaccagccggaaataagcgatgccgaatatgaccggatg
ctccgggagttaatttctttggagcagcagtatcccgagtttatcactcccgattctcca
tcccagcgggtgggaggggaagttgccaaagaatttcgggaagtggctcatttaaaaccg
atgtacagtcttgataacgcctttggaccggaggatttaaaggaatttgaccggagggtc
cggtcactgttacccgggcaggaggtagagtatgaggtagagttaaaaatcgacggtctg
gctatatctttggtgtatgaaaacggagttttggtgcgaggagccacccggggtaacggt
accacgggggaagatattacggctaacgttaaaaccattaaagctatacctctaaaatta
cgaaaccccataccccttttagaagttcggggcgaagcgtacatgcccaaggaatctttt
gcccgcttaaatgagcagcgggaagagcggggggagcccttatttgccaatccccggaat
gcagcagcagggtcgttacggcagcttgaccccaaagttaccgctgaacgggacttaagt
gcttttatgtatgctattggggaagttcagggatacgagcccaaaacccaggcggaatta
atggagtggctttcggagcttgggtttaaagtaaatccttaccgggaagtatttaacaat
attgatgacgttattaattactgccagagctggcacgaaaagaggttttccctgccctat
gttattgatggtttggtaattaaagtaaatagtcttgcccagcaggaagctttggggttt
accgcaaagtctccccggtgggcgattgcttataagtttccagcggaaattgccgagacc
cggttaaaagatattatcgtacgggttggccgtaccggggttttaacaccgacggctatt
tttgaaccggtaagcctggctggcactaccgtgacgcgagcatcgctccataacgaagat
tacatccgggaaaaggatattcggattggcgatatcattagggtgcaaaaagctggcgaa
ataattccggaagtagtggaagtagtgaaggaaaagaggaccggtgctgagaaggagttt
gtcatgcctgatacttgtccggtctgccaggggaaagcggtaagacttcccggggaagca
gcctggcggtgtaccaatgcttcctgtcctgctcagttaaaagaaggcatcgtgcatttt
gcgtcaagaggagctatgaatattgaaggcctgggaccggcggtggccgagctcttattg
gaagctggcttaattcataattatgccgacctttactacttatctgccgaagaggttgcc
aggcttccgcggatggggaaaaaatcggccgaaaacctgattaatgctattgaaaaaagt
aagcaaaacagtttagaacggcttatttacggccttggaattcggcttgtaggggaaaaa
gctgcgcgggatttggcagttcattttaaggagcttgacaagttaattgccgccggggaa
gaggagatcatggcgattccttctgtggggcccaaaatggcggcttcaattaaggcgttt
tttgcccaaaaggaaaatttagaacttatcgaaaagttaaaagcagcaggagtaaacact
aagtacctggccgaggtgcgggataaccgcttagaaggattaacttttgtcttaaccgga
accctttcatccttcacccgcaaagaagcggagcaactcattttaagtctcggcggaaaa
gtaagttcttccgtttcgaaaaaaaccagttatgtagtggttggcgaagacccgggcagt
aaattaaccaaagccaaagagctgggtattccaattttaaccgaagaggagtttcgccag
atggtgatgagctaa
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