Croceimicrobium hydrocarbonivorans: H4K34_17190
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Entry
H4K34_17190 CDS
T07152
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chyd
Croceimicrobium hydrocarbonivorans
Pathway
chyd03030
DNA replication
chyd03410
Base excision repair
chyd03420
Nucleotide excision repair
chyd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H4K34_17190 (ligA)
03410 Base excision repair
H4K34_17190 (ligA)
03420 Nucleotide excision repair
H4K34_17190 (ligA)
03430 Mismatch repair
H4K34_17190 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chyd03032
]
H4K34_17190 (ligA)
03400 DNA repair and recombination proteins [BR:
chyd03400
]
H4K34_17190 (ligA)
Enzymes [BR:
chyd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H4K34_17190 (ligA)
DNA replication proteins [BR:
chyd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H4K34_17190 (ligA)
DNA repair and recombination proteins [BR:
chyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H4K34_17190 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H4K34_17190 (ligA)
MMR (mismatch excision repair)
DNA ligase
H4K34_17190 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H4K34_17190 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_ligase
HHH
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
QNR24082
UniProt:
A0A7H0VED4
LinkDB
All DBs
Position
3836858..3838876
Genome browser
AA seq
672 aa
AA seq
DB search
MSPDEARNRIELLRKELNHHNYLYYLLDKPEISDFEFDQLLKELQKLEAEFPQFDDPNSP
SRRVGGGITKDFPTKPHRHPMLSLSNTYSREELEDYLKRTQKALPDEDLEFVCELKYDGA
AVSIQYKNGQLVQALTRGDGSQGDEITNNIKTIPRVPLHLRGKDYPEDFEIRGEVFMPLE
GFARLNQSRIDEGLEPFANPRNSASGTLKMQDSSLVAQRPLDCFLYFVMLEQPLFDNHYD
AVLAAGEWGFNIPRPEKGYLHKAKSIDEIFEFINRWDEERHQLPFEIDGIVIKVNSFRLQ
ERLGATAKSPRWAIAYKFKAEQQETVLETVTYQVGRTGAITPVANLKPVSIAGTTVKRAS
LHNEDQIKKLDLRIGDWVYVEKGGEIIPKVVGVNYSKRSADAPEFEYISHCPECGTELQR
AEDEAQHYCPNAETCPPQVSGRIQHFISRKAMDIEGMGSETVEQFVQADLIKNFADLYDL
KVADILPLERMAEKSAQNIVDGIAASKAIPFERVLFALGIRYVGETVAKKLARHFETIEA
LMAATAEQLVNVDEIGDRIAESVVAYFSDSQNRKQIERLQQAGLQFEIVKQEGASESLAG
LSIVISGNFERFSRNELKELIEQHGGKNTGSVSGKTSLIVAGEGMGPSKRKKAEDLGVRI
IDENEFAEMIGL
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgagtccagatgaagcccgcaatagaattgagctcttacgcaaggagcttaatcaccat
aattacctctattatttattggataaacccgagatttccgatttcgagtttgatcagtta
ttaaaagaattacagaagctggaagcggaattcccgcaatttgatgatcctaattcgcct
agccgtcgtgtgggtggtggcatcaccaaagattttcccaccaagccgcatcggcatccc
atgctttccctgagcaatacctatagccgagaagaactggaggattatctcaagcgcacc
caaaaagccttacccgatgaggatttggaatttgtatgcgagcttaaatacgatggagca
gcggtaagcattcagtataaaaatggccaattggtgcaggccctaactcggggtgatggc
agtcaaggcgatgagattaccaataatattaaaaccattcctcgggttcccttgcattta
agaggtaaggactatccggaggattttgagatacgcggggaagtgtttatgccgctggaa
ggctttgctcgcttgaatcaatcgcggattgatgaagggctggagccttttgccaatccc
cgaaattcagcttcaggaaccttgaaaatgcaggattccagcttagtggcgcaacgtccc
ttagattgttttctctatttcgtgatgctggagcagcccttatttgacaaccattatgat
gcggttttagcggctggtgaatggggttttaatattcccagaccggagaagggctatttg
cataaggccaagagcattgatgagattttcgaattcattaatcgctgggatgaggaaagg
catcaattgccctttgagattgatggcattgtaattaaggtgaattcttttcgcttgcaa
gagcgcctgggagctaccgccaaaagtccgcgctgggccattgcttataagttcaaagca
gagcagcaggaaacagtattggaaacagtgacctatcaggtagggcgtaccggtgccatt
actcctgtggctaatctgaagcccgtttccatcgccggaactacggtaaaacgtgccagt
ttgcataatgaggatcagatcaaaaaactggatttacgcattggtgattgggtttacgta
gaaaagggtggtgagattatccctaaggtggtaggggttaattatagcaagcgttccgct
gatgcgccagaatttgaatatatcagtcattgtccggaatgcggcaccgaattgcaaaga
gcagaggatgaagcccagcattattgccccaatgccgagacttgtcccccgcaagtaagt
ggtagaattcagcatttcatcagccgtaaggccatggatattgaaggtatgggctctgaa
accgttgagcaatttgtgcaggcggacttgattaagaattttgcggatctctatgatctt
aaggtggcagatattctcccgctggagcgaatggccgaaaaatcggctcaaaatattgtg
gatgggattgcggcttccaaagctattccctttgaaagggtattattcgccttgggaatt
cgctatgtaggcgaaactgtagctaagaaattagcccgtcattttgagactattgaggcc
ctaatggctgcaactgcagagcaattggtgaatgtggatgaaattggtgatcgcattgct
gaaagcgtggtggcctatttctccgatagtcaaaatcgcaagcagatagagcgcttgcag
caggcaggcttgcaatttgagatcgtaaaacaggagggcgcttcagaatcattggccgga
ctaagtattgtaatcagcggcaattttgaacgctttagtcgcaatgaactcaaggaattg
attgagcagcatggtggtaagaataccggttcggtatctggtaagacttctttaatagtg
gctggagaaggcatggggccttccaaacgcaagaaagcagaggatttaggggtgcggatt
atcgatgaaaatgaatttgctgaaatgattggattatga
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