Clostridium hylemonae: CE91St63_27620
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Entry
CE91St63_27620 CDS
T09318
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chyl
Clostridium hylemonae
Pathway
chyl03030
DNA replication
chyl03410
Base excision repair
chyl03420
Nucleotide excision repair
chyl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CE91St63_27620 (ligA)
03410 Base excision repair
CE91St63_27620 (ligA)
03420 Nucleotide excision repair
CE91St63_27620 (ligA)
03430 Mismatch repair
CE91St63_27620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chyl03032
]
CE91St63_27620 (ligA)
03400 DNA repair and recombination proteins [BR:
chyl03400
]
CE91St63_27620 (ligA)
Enzymes [BR:
chyl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CE91St63_27620 (ligA)
DNA replication proteins [BR:
chyl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CE91St63_27620 (ligA)
DNA repair and recombination proteins [BR:
chyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CE91St63_27620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CE91St63_27620 (ligA)
MMR (mismatch excision repair)
DNA ligase
CE91St63_27620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CE91St63_27620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
HHH
Nlig-Ia
Lar_restr_allev
IBR_2
Zn_ribbon_DUF2089
Motif
Other DBs
NCBI-ProteinID:
BDF05700
LinkDB
All DBs
Position
complement(2995652..2997631)
Genome browser
AA seq
659 aa
AA seq
DB search
MDYMSRQKKARMQELVEQLNKAGKAYYQDAEEIMSNYEYDRLYDELVSLEKELGITLSGS
PTANVGYEVLSELPKERHDSPMLSLDKTKDVEELKKFAGGQKVMMSWKLDGLTIVLTYRD
GTLYKAVTRGNGEVGEVITNNARVFRNIPLQIAYKGELILRGEAVIGYKDFEKINGEIAD
VDARYKNPRNLCSGSVRQLNNEITAKRNVRFYAFTLVQADGVDFHNSRVCQMEWLREQGF
EVVEFCEVTKDTLEAEVIKFSEKIAENDFPSDGLVLVYDDVEYGRSLGRTSKFPRDSFAF
KWADETKETKLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNLSIMEELELGVGD
EIEVYKANMIIPQIAENLTRSGVKDIPLHCPVCGGDTEVKQVSNAKALYCINPDCQAKHL
KSFALFVSRDALNIEGLSEATLEKFIAKGYIKEYADIFHLERFRDEIEKMEGFGEKSYRN
LIESIEKARTTTLPKVIYGLGIANIGLANAKMICSEFGCDTDKMLAAGPEELSAIQGVGG
VIAGAFVDYFSDERHVRIFRDLLKELTIPAEETEQKEQRFAGVNFVITGSVEHFANRGEI
KELIENLGGKVTGSVTSKTNYLINNDVTSTSSKNKKANELGIPIISEKDFLEMLGESQG
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggattatatgagcagacagaaaaaggcaagaatgcaggaactggtagaacagctgaat
aaggcggggaaggcgtattatcaggacgcggaagagatcatgagcaattacgagtatgac
agactgtatgacgaactcgtgtcattggagaaagagcttggaataacgctgtcgggcagc
ccgacggcaaatgtaggatatgaagtcttaagtgaactgcccaaagagaggcacgacagt
cccatgctgtcactggataagacaaaggatgtggaggaacttaagaagtttgccggcggc
cagaaagtcatgatgtcgtggaagctggacggtctgacgatcgtgctcacataccgtgac
ggaacgttgtataaggcggttacgagaggcaacggggaggtgggcgaagtcatcacgaac
aatgccagagtgttcaggaacattccgctccagatcgcctacaaaggagaacttatactg
cggggagaggcggtcatcggatataaagattttgagaagatcaacggggagatagcggat
gtggacgccagatacaaaaatccccgcaatctttgcagcggctctgtacgccagttgaac
aacgagatcacggcaaagcgcaatgtcaggttttatgcgttcacgctcgtacaggcagac
ggcgttgattttcataattcccgtgtctgtcagatggagtggctgagagaacagggattt
gaagtggtggaattctgcgaagtcacaaaggatacgctggaggcggaagttattaaattt
tccgaaaaaatagcggaaaacgattttccatcggacggacttgtgttagtatatgatgat
gtggaatatggacgctcactggggaggacttccaagtttccgagagattcatttgcattt
aagtgggcggatgagacgaaggaaacgaagcttctcgagatcgagtggagtccgtccagg
acaggactgatcaatccggtagccatattcgagcctgtagaacttgaaggtacgacggtc
agcagggcaagcgtccataacctgagtatcatggaggagcttgaactcggcgtgggcgat
gagatagaagtatataaggcaaatatgatcatccctcagatcgcggagaatctcacaaga
agcggtgtgaaagatattcctttgcactgtccggtatgcggcggcgatacggaggtcaaa
caggtgagcaacgcaaaggcgttgtactgcatcaatccggactgtcaggcaaagcatctg
aagtctttcgctctgtttgtgagcagagacgcgctgaatattgaaggattatctgaagca
acactggaaaaattcatcgcaaaggggtatattaaagagtatgcagatatttttcatctg
gaacgcttccgggacgagatagaaaaaatggaagggttcggggaaaaatcataccgcaat
cttatagaaagcatagagaaagcaaggactaccacactgcccaaagtgatctacgggctt
gggatcgccaacatcggactggcaaacgcgaagatgatatgcagtgaattcggctgtgac
acagacaaaatgcttgccgccggaccggaggaattaagtgccatccagggtgtgggaggc
gtgatcgccggagcctttgtcgattatttttcagatgaaaggcatgtgcgcatattccgc
gaccttttaaaagaactcacgataccggcagaggagacagaacaaaaggagcagagattc
gcgggcgttaactttgtgataaccgggagtgtggaacactttgcaaaccggggcgagata
aaggaactgatcgagaacctcggcggaaaggtgacaggttccgtgacttccaaaacaaat
tacctcataaataatgatgtgacatccacatcatccaaaaataagaaagccaatgaactg
ggaattcccatcatatctgaaaaagatttcctggaaatgctcggtgaaagtcagggctga
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