KEGG   Chryseobacterium sp. StRB126: CHSO_1297
Entry
CHSO_1297         CDS       T03602                                 
Name
(GenBank) DNA ligase, naD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
chz  Chryseobacterium sp. StRB126
Pathway
chz03030  DNA replication
chz03410  Base excision repair
chz03420  Nucleotide excision repair
chz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:chz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CHSO_1297
   03410 Base excision repair
    CHSO_1297
   03420 Nucleotide excision repair
    CHSO_1297
   03430 Mismatch repair
    CHSO_1297
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:chz03032]
    CHSO_1297
   03400 DNA repair and recombination proteins [BR:chz03400]
    CHSO_1297
Enzymes [BR:chz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CHSO_1297
DNA replication proteins [BR:chz03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CHSO_1297
DNA repair and recombination proteins [BR:chz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CHSO_1297
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CHSO_1297
   MMR (mismatch excision repair)
    DNA ligase
     CHSO_1297
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CHSO_1297
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 HHH_5 BRCT DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH 5_3_exonuc DUF7575 A2L_zn_ribbon
Other DBs
NCBI-ProteinID: BAP30334
LinkDB
Position
complement(1497375..1499381)
AA seq 668 aa
MSENIQQKIEQLRKELHQHNENYYLLDTPTIADYEFDMLLERLQDLEAKYPEFYDENSPT
MRVGGGITKVFPTIQHKFRMYSLDNSYDFDDLQDWEKRIIKTIDEPVEFVAELKYDGASI
SILYENGKLTQAVTRGDGFQGDEITPNVRTISDIPLKLKGDFPSQFYMRGEIYLTRKNFN
KLNALREEEGLDPFMNPRNTASGSLKMQDSAEVRKRALSSVLYQFISDEIPAETHWELLQ
KAQGWGFKTSQQVKLCKTLDEVKEFITFWDTERHNLPFEIDGIVLKVNSLPQQRQLGYTA
KSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDII
KKLDLHENDFVYVEKGGEIIPKIVGVNIDKRTNESREIEYIKHCPECGTELIKIEDQAIH
FCPNELHCPPQVVGRMIHYVSRKALNIDNLGSETIEQLYREKLIENPADFYTLTKEQLLP
LERMAEKSAQNIITGIEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFPTIEELKNATVE
ELCQVEDIGVKIAVSIEEFFKNTENLLMIERLKSYGVQLEKGESTNEVLSNVLEGKTFLF
TGKLLLFTREAAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTITILDEQQ
FLDLIEKQ
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgtctgaaaacattcaacaaaaaatagaacagctccgtaaagagctgcaccagcataac
gaaaactattaccttctggatactcccaccattgcagattatgaatttgatatgttactg
gagagacttcaggaccttgaagccaaatatcctgaattttatgacgaaaactcacctaca
atgcgtgttggtggcggtattacaaaggtatttccaacgattcagcataaattcagaatg
tattctctggataactcctacgattttgatgatctgcaagattgggaaaaaagaattatc
aaaaccattgatgaacctgtagaatttgtagccgaattgaagtatgacggagcttctatt
tctattctttatgaaaacggaaagcttactcaggctgtaacccgtggtgatggttttcag
ggagacgaaatcactccaaacgttcgtaccatttctgatattccattaaagttaaaaggt
gattttccttcgcaattctatatgcgtggtgaaatttatttaacgagaaaaaattttaac
aaacttaatgcacttcgtgaagaagaagggctggatccattcatgaatcctagaaatacc
gcgagtggaagtttaaaaatgcaggatagtgctgaggttagaaaacgtgcactttcttct
gtactataccaattcatttccgatgaaattcccgcggaaactcattgggagttgcttcag
aaagcacaaggttggggattcaaaacttcgcagcaggttaaactttgcaaaacgttggat
gaggtaaaggaatttatcacattttgggatacggaacgtcacaatttacctttcgaaatt
gatgggattgtattaaaagtgaattctttaccacagcagagacagcttggatatacagct
aaatctccacgttgggctatggcttataagtttaaagctgagaaggtagaaactgaactt
caaagtgtttcttatcaggtgggaagaacgggagcaattactcctgtggctaacttaaaa
cctgttttactggccggaacgattgtaaaaagagcatccctgcataatgaagatatcatc
aaaaagcttgatcttcatgaaaatgattttgtgtatgtagaaaaaggaggtgaaattatt
ccaaagattgttggggtaaatatagataagagaactaatgaaagcagggaaatagaatac
atcaaacattgtcctgaatgtggaaccgaactgataaaaattgaagaccaggccattcat
ttctgtccgaacgaacttcactgtccgccgcaggtggtgggaagaatgattcactatgtt
tcaagaaaagcattgaatattgataaccttggaagtgaaaccatagaacagctttacagg
gaaaaacttattgaaaatcctgccgatttctatactttaactaaagaacagcttcttcca
ctggaaagaatggctgaaaaatctgctcagaatatcattacaggaattgaaaaatcaaag
gaaattccatttgaaaaagtattgtacggaattggtatcaagcatgtaggagaaacagtt
gctaaaaaattagtaaaaaacttccctactattgaagagttgaaaaatgctactgttgaa
gagctttgccaggtagaagatattggggttaaaatagcagtaagcattgaggagtttttc
aaaaacactgaaaacctattgatgatcgagcgtttgaaatcttatggagtacagcttgaa
aaaggagaaagcaccaatgaagtattatccaatgttttagaaggaaaaaccttccttttc
actggaaaattattactcttcaccagagaggctgctgaggaaatggtagaaaagcatggt
ggaaagaatatttctgccgtttcaaaaaaccttaactatcttgtggtgggagaaaaagcc
ggaagcaagctaaaaaaagctcaggacatcggaacgattaccattcttgatgaacagcag
tttctggatttgattgagaaacagtaa

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