Citrobacter sp. TSA-1: HF677_000415
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Entry
HF677_000415 CDS
T09275
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cib
Citrobacter sp. TSA-1
Pathway
cib03030
DNA replication
cib03410
Base excision repair
cib03420
Nucleotide excision repair
cib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HF677_000415 (ligB)
03410 Base excision repair
HF677_000415 (ligB)
03420 Nucleotide excision repair
HF677_000415 (ligB)
03430 Mismatch repair
HF677_000415 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cib03032
]
HF677_000415 (ligB)
03400 DNA repair and recombination proteins [BR:
cib03400
]
HF677_000415 (ligB)
Enzymes [BR:
cib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HF677_000415 (ligB)
DNA replication proteins [BR:
cib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HF677_000415 (ligB)
DNA repair and recombination proteins [BR:
cib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HF677_000415 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HF677_000415 (ligB)
MMR (mismatch excision repair)
DNA ligase
HF677_000415 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HF677_000415 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QKE18203
LinkDB
All DBs
Position
90140..91819
Genome browser
AA seq
559 aa
AA seq
DB search
MGLWKCIGLVLLMWYLPSWAVCPVWSPARAQEEISRLQQQITQWNDSYWKQGESVVDDAV
YDQLNAQLIQWQRCFGDEAPSDLSAPPISGTVSHTVPHTGVRKLADKQALQQWMHARSDL
WVQPKVDGVAVTLVYRNGNLIRAISRGNGLKGEDWTQKVLQIPSVPRTTSGLLSNSTLQG
EIFLQQQGHIQQQRGGMNARSKVAGMMMRQSNPEMLRSLAIFIWAWPDGPVAMSERLEQL
TAAGFSFTQRYTQAVKSVDDVEQARARWWTSALPFVTDGVVVRTGKEPRAQYWLPGQGDW
LAAWKYPPVARVSEVTGIQFSVGKSGKIAVVALLVPVMLDDKRVQRVNIGSVRRWNEWDI
APGDQILISLAGQGIPRIDEVVWRSTQRNKPAPPEGRFNSLTCFYATAECQEQFVARLVW
LGAKDVLGLEGMGEAGWRELHQTYRFEHIFSWLGLTQEQLQSTFGVNKGGKLWHQFNLSR
HLPFTRWVIATGIPLTQATLNASRDGSWQQLRERSEQSWRQLPFMGERRARQVIQWLEDK
EITALSNWLAAQRITGFMP
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgggattatggaaatgcatagggctggttttgctaatgtggtatctaccctcatgggcg
gtatgccccgtctggtcgcctgccagggcacaagaggaaatttcacgactacagcagcag
ataacacagtggaatgacagttactggaaacaaggggaaagtgtcgtagacgacgccgtt
tatgaccagctcaatgcgcagctcatccagtggcagcgctgttttggcgatgaagcccca
tcagatctatctgcgcccccaataagtggaaccgtctcgcacacagttccccacacggga
gttcgaaaacttgccgataagcaagcgctacaacaatggatgcatgctcgtagcgatctc
tgggtgcagccgaaggtggatggcgtggcggtcacgctggtttatcgcaatggcaatctg
atacgggcgattagccgtggtaacggtctgaaaggcgaagactggacgcaaaaggttctt
cagatcccttccgttccacgtactaccagcgggctgctttctaacagtacgttgcagggg
gagatatttttgcagcaacaagggcatattcagcagcagagagggggaatgaacgcccgc
tcaaaggttgctggaatgatgatgcgccagagcaacccggaaatgttacgctcgctggct
atttttatctgggcctggcctgatggtccagttgccatgtcggaaagacttgagcaactc
actgctgccgggttcagtttcacgcaacgatatactcaggccgtgaagagtgtggatgac
gtcgagcaggcgcgcgccaggtggtggacttcagcgttaccttttgtgacggatggtgtg
gtggtgcgaacgggaaaagaaccgcgggcgcaatactggctacccggacagggagactgg
ctggcagcgtggaaatatcctcccgtggccagggtatctgaggtgacaggtattcagttt
tccgttggcaaaagcggaaaaattgcggtggttgcattgctggtccccgtcatgctggat
gataagcgggtgcagcgcgtcaatattggctcagtacggcgctggaatgaatgggatatt
gcgcctggcgatcagattctgataagtctggccggacaggggattccccgtatagatgag
gtggtctggcgcagcacccagcgtaacaagccagcaccacctgaggggcgcttcaattca
ctaacttgtttttatgccacagcggagtgtcaggaacagtttgttgccaggctcgtctgg
ctgggggccaaagatgtgttagggctggagggtatgggcgaggcgggatggcgggagcta
catcagacgtatcgctttgaacatatcttttcctggcttggattaacgcaggagcagcta
cagtccacatttggcgtgaacaaaggggggaagctgtggcatcagttcaatctgtcacgc
catcttccatttacgcgctgggtgattgccacgggaataccgttaacacaggcaacgttg
aatgccagtcgggatggatcgtggcagcagttacgggaacgcagtgaacaaagctggcgg
caacttcctttcatgggggagcgacgggcacgacaggttattcagtggctggaggataaa
gagatcacagcgctgagcaactggttagctgctcagcggatcacgggctttatgccttaa
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