Citrobacter sp. TSA-1: HF677_006945
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Entry
HF677_006945 CDS
T09275
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cib
Citrobacter sp. TSA-1
Pathway
cib03030
DNA replication
cib03410
Base excision repair
cib03420
Nucleotide excision repair
cib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HF677_006945 (ligA)
03410 Base excision repair
HF677_006945 (ligA)
03420 Nucleotide excision repair
HF677_006945 (ligA)
03430 Mismatch repair
HF677_006945 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cib03032
]
HF677_006945 (ligA)
03400 DNA repair and recombination proteins [BR:
cib03400
]
HF677_006945 (ligA)
Enzymes [BR:
cib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HF677_006945 (ligA)
DNA replication proteins [BR:
cib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HF677_006945 (ligA)
DNA repair and recombination proteins [BR:
cib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HF677_006945 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HF677_006945 (ligA)
MMR (mismatch excision repair)
DNA ligase
HF677_006945 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HF677_006945 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_ligase
Prok-E2_C
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QKE19430
LinkDB
All DBs
Position
1475346..1477361
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPDLVTPDSPTQ
RVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDKLTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPSRLEVRGEVFLPQAG
FEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGVLPDTHL
GRLLQFKEWGLPVSDRVALCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSMALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREIVFPAHCPVCNSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFTLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALEA
ASIEELQKVPDVGIVVATHVFNFFAEESNREVIVQLLAQGIHWPAPVVINAEEIDSPFAG
KTVVLTGSLSLMSRDDAKARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEAEMIRLLDA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgagtat
ctctaccatgtgatggacgcgccggaaattcccgatgcggaatacgatcgcctgatgcgc
gaactgcgcgagctggaagcgcagcatccggaccttgttacccccgactcgccaacccaa
cgcgttggcgccgcgccgttaaccgcgttcagccagattcgccatgaagtgccgatgctg
tcgctggataacgtgtttgatgaagagagttttctcgccttcaacaagcgcgtgcaggac
aggttaaagagtaccgataaactgacctggtgctgtgaactgaaactggacggcctggca
gtcagtatcctgtatgaaaacggtgtgctggtcagcgccgcaacgcgtggtgatggcacc
acgggtgaggatattacctctaatgtgcgcaccattcgcgcgatcccgttaaaactgcgt
ggcgaaaacatcccttcacgtcttgaagtgcgcggtgaagtgttcctgccacaggccgga
tttgaaaaaattaacgaagaggcccgccgcactggcaacaaagtgtttgctaacccgcgt
aacgcggcggccggttcattgcgccagctcgatccgcgtatcacagcgaagcgaccgctt
actttcttctgctatggcgttggtgtgttggaaggcggcgtgctgccagatacccatctg
ggccgcctgctgcaatttaaagagtggggcctgccggtaagcgacagagtggcgctttgc
gactccccggaggaagtacttgcttactatcacaaggttgaagaagaccgaccaacgctg
ggatttgatatcgatggcgtggtgatcaaagtcaactctatggcgttgcaggagcaactg
ggctttgttgcccgcgcgccgcgctgggctgtggcctttaagttcccggcgcaggagcag
atgactttcgtacgcgatgttgagtttcaggttggacgtaccggggcgattacccccgtc
gcccgccttgagccggtccaggttgccggggtgctggtcagtaacgcaacgctgcataac
gctgatgaaatcgagcgtctggggttgcgtattggcgataaagtcgtcattcgccgtgcg
ggcgatgtcatcccgcaggtggtgaacgtcgtgctttctgaacgcccggaagatacccgc
gaaattgtgtttccagcgcattgtccggtttgcaactctgatgttgaacgtgtggaaggc
gaagcggtcactcgctgcaccggcggtttaatctgtggagcacagcgtaaggaatcgctg
aaacactttgtttcccgccgcgcgctcgacgttgacggtatgggcgacaaaattatcgat
caactggtcgagaaagagtatgtccacacgccggcggatcttttcaccctgaccgccggt
aaactgacggggcttgatcgtatggggccgaagtcggcgcaaaacgtggtcaatgcgctg
gaaaaagcgaaagaaaccacgtttgcccgtttcctctatgcgctaggcattcgtgaagtc
ggcgaagctacggctgctggtctggcggcgtattttggcacgcttgacgcgctggaagcc
gcttccattgaagagctgcaaaaagtgccggatgtcggcattgtggtggcgacgcacgtg
tttaatttcttcgccgaagagagcaaccgcgaggtaattgttcaactgctggcgcagggg
atccactggccagcgccggtggtcattaacgctgaagaaatcgacagccccttcgcaggt
aaaacagtggtgctgaccgggagcctgagcctgatgtcgcgcgatgacgccaaagcgaga
ctgaccgagttaggtgcaaaagtggccggtagcgtgtcgaagaaaaccgatctggtgatt
gccggtgaagcagcgggttcgaaactggcaaaagcacaggaactgggtattgccgtgatc
gatgaagctgaaatgatccgcttactggatgcctga
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