Citrus x clementina (clementine): CICLE_v10000168mg
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Entry
CICLE_v10000168mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
CICLE_v10000168mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10000168mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
CICLE_v10000168mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
18042931
NCBI-ProteinID:
XP_006433056
UniProt:
V4T9Q7
LinkDB
All DBs
Position
Unknown
AA seq
750 aa
AA seq
DB search
MSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCG
QVGHLAAECHGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINF
ERIVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRREFAAMGGYLTDAGEVLLDR
VEKFIQSVAVYEDQIFQKRTRIQQAYEYNEAMKLNARRESSEELLQAPVAVADTVKLGEP
GYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFYPYHYAPFA
SDLKDLSDLEITFFLGEPFKPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDF
QIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLYVHPQHALY
QQIILYYQLYHQLPPQDRFAWEIDVNTSGGMNGYIWLCERNGFRSIIPSPVKGLPDIERN
QAINVTYLNPQKHRHIPEPPKGATIPAKTLKPIDIKPFPTLWHEDNSRRQQGRERPQVPG
AIAGPVLGEAAHRLIKNTLNYKPNGSPGFFEQPSYRNFQGNYANAVTRLRPAAPSGHERG
YGDESRYNYGNYNYPQGMRGNSRFPVPSNGMQGNQHHARMQERFQHQDLGTGMSALAIEE
STRSRPPIVMLSRVQNSGYSGNPSQQFLPNMGPLPPPPNNWINRAVAGEPAMYNGHESAS
GGAYEKQQVKKVYQIKTRLPYETSDPLNQK
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgtcatacatacgattacagcgtaaccttcccggttttgatccaaacacccggcattgt
ctgtatggtctggatgcagatttaataatgctgtctttggccacacatgagattcacttt
tcgatattgagagaggtaatcactttacctgggcaacaggaaaaatgttttgtttgtggc
caagttggccatctagcagctgagtgtcatggtaagccaggtgacaatcctgcagattgg
aatggagtggatgatactccaattcacaagaagaaataccagtttctaaacatctgggtg
ctgcgagaatatttgcaatatgagttggacatacccaatccaccatttccaataaacttt
gaaagaattgtggatgattttgtatttctatgtttctttgttgggaatgacttcctccca
catatgccaacactggaaatcagggagggtgctataaatttgttgatgcatgtttataga
agggagtttgctgctatgggtggttatcttactgatgcgggtgaggttttattggataga
gtagagaaatttatccagtccgttgccgtatatgaagatcaaatctttcagaagaggaca
cgtatacagcaggcttacgagtataatgaagcgatgaaacttaatgcaagaagagaatcc
tctgaagagctattacaagcaccagttgcagtcgcagacacggttaaattgggggagccc
ggatacaaagaaaggtattatgccgataagtttgaaatatcaaacccagaagagattgat
aaagttaaaaaggatgtagttttgaagtatgtggaaggtttatgctgggtctgccgctat
tactatcaagatgtttgctcttggcaatggttttatccataccattatgctccatttgct
tcagatcttaaagatttatccgaccttgaaataacgtttttcttgggagaaccatttaaa
ccctttgatcagctaatgggaactctaccagctgcaagttctagtgctttgcctgaaaaa
tacagaaatttgatgactgatccatcatcacctatctacaaattctatcctcctgatttt
cagattgatatgaatggaaaacgctttgcatggcagggcgttgtcaagttgccatttatt
gacgagaagttgttgctgcgtcaaacaaagaagcttgaggtgtttttaacggaagaagag
ctgtttcgaaatagtgtgatgcttgatttactttatgttcatccacagcatgctttgtat
caacagattattttgtactaccagctctaccatcagttgcctcctcaagacagattcgct
tgggaaattgatgtaaataccagtgggggaatgaatggatacatttggttatgtgagaga
aatggtttcagaagcatcatcccttcacctgtcaaggggctgccagacattgagcgtaac
caagccataaatgttacgtatcttaaccctcaaaaacatagacacatcccagaacctccc
aagggcgcaaccatacctgctaagaccctaaaaccaatagacattaaaccatttcctact
ctttggcatgaagacaatagtcggcgccagcaaggcagggagaggccacaagtgcctgga
gccatagctggccctgtattgggagaagcagcacatcgtcttatcaagaatacacttaat
tataaacctaatggttctcctggattcttcgagcaaccatcatatcgcaatttccaaggc
aactatgcaaatgcagtcaccagactgagaccagctgcaccttctgggcatgaaaggggc
tatggtgatgaatcaagatataattatggaaattacaattatcctcaaggcatgagaggt
aactctagatttccagtcccatcaaatggtatgcaaggaaaccaacaccacgctaggatg
caggagagatttcaacaccaggacttggggactgggatgtctgccttggcaattgaagaa
agcaccagaagcaggcctcctattgtgatgttatccagggtgcaaaactctggatactca
gggaaccctagccagcagtttctgccgaacatgggtcctcttccaccaccacccaataac
tggatcaacagagcagtagctggagagcctgcaatgtataatggacacgaaagtgcatct
ggtggagcttatgagaagcagcaggtgaagaaggtttatcagattaagacacgactgcct
tatgaaacatcagatcccttgaaccaaaaatga
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