Citrus x clementina (clementine): CICLE_v10021439mg
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Entry
CICLE_v10021439mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CICLE_v10021439mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10021439mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CICLE_v10021439mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
AAA_15
AAA_23
AAA_28
AAA_5
SMC_N
AAA
NACHT
AAA_18
AAA_25
AAA_30
SRP54
PduV-EutP
AAA_14
AAA_22
AAA_33
AAA_24
Zeta_toxin
Arf
AAA_16
Rad17
Motif
Other DBs
NCBI-GeneID:
18049331
NCBI-ProteinID:
XP_006443808
UniProt:
V4T9R0
LinkDB
All DBs
Position
Unknown
AA seq
294 aa
AA seq
DB search
MADGMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLDISPGSRCLLVGANGSGKTTLLK
ILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEH
MIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD
LDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE
LRNSTNLLSVVESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYYR
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggaatgaatgagaatgagaaattgaacagtatcaaagtatgcggcatgcaa
ttttcttacgaggggaacgataagcctcctctattctacgatttcaacctcgatatctcg
ccgggatctcgttgccttctcgttggcgccaatggatctggaaaaacgacgctgttaaag
attttggcgggaaagcatatggtgggaggaagagacgtcgtgcaagtgctgaatcgatcg
tcttttcatgacactcaacttgtttgtagtggtgacctatcttatcttggaggatcttgg
agtaaaactgttggctctgctggggagattccactccagggagacttctctgctgagcat
atgatatttggagttgaaggctctgatcctgtaagaagagagaggttgattgagctactt
gatattgacctgcagtggcgaatgcataaggtatctgatggacagcggcgtcgagtccaa
atctgtatgggtcttcttcatccttttaaggtgcttttgctggatgagattacagtggat
ctagacgttgttgccaggatggatttacttgattttttcaaggatgaatgtgagcagaga
ggagctacaattgtatatgcaacccatatttttgacggattggaaacatgggctacacat
ctggcatacatccaagatggtgagttgaggagggctgagaagttagcagaactcgatgag
ttgaggaactctactaacctactttctgttgttgagtcctggctccgttctgaaaccaag
cttgagaagaaaaggccagtcgatcctcctaaacaagtgcaaaagacctctccctttggt
tcctctcctttcatgtcatccagacacatggcatactaccgttaa
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