Ctenopharyngodon idella (grass carp): 127505216
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Entry
127505216 CDS
T08802
Name
(RefSeq) ATP-dependent RNA helicase A isoform X1
KO
K13184
ATP-dependent RNA/DNA helicase DHX9 [EC:
5.6.2.6
5.6.2.4
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cide03041
]
127505216
03012 Translation factors [BR:
cide03012
]
127505216
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
127505216
5.6.2.6 RNA 3'-5' helicase
127505216
Spliceosome [BR:
cide03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
127505216
Translation factors [BR:
cide03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127505216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
Dicer_dimer
ResIII
AAA_19
AAA_14
nSTAND3
Motif
Other DBs
NCBI-GeneID:
127505216
NCBI-ProteinID:
XP_051736577
LinkDB
All DBs
Position
2:complement(7756479..7769657)
Genome browser
AA seq
1322 aa
AA seq
DB search
MIQTPSTMADIKNFLYAWCGKKKITPNYDIRAAGNKNRQKFVCEVRVEGYNYIGMGNSTN
KKDAQSNAARDFVNYLVRTKEISPAEVPALGACVPDGVNEEGGGGGGGGEFGNLPSNCPL
PPHLAVKKEIEPSELSAPVPGVTGLGYSGFGNAQWERGANLQQYYSKREEQEDKATLESE
EVDLNAGLHGNWTLDNAKARLNQFFQKEKNQTDYKYSQVGPDHNRSFIAEMTIFVRQLGR
KVCAREHGSTKKLAAQSCALSLVRQLYHLGVIEAFTGLTKKKEGESVDVYEVNVSDDLQQ
QLHSIVQELGIQIPPPPQDPSSPVSLVQGKLAHFEPSQRQSMAGVVPWSPPQVNWNPWTS
SNIDEGPLAFCTPEQISTDLLQELNYQLEQDKNLQTILEERSQLPVKNFKEQIMSAIHNS
PVVIIRGATGCGKTTQVPQYILDEFIQGGRASECNIVVTQPRRISAVSVSERVSFERGEE
VGKSCGYSVRFESVLPRPHASILFCTVGVLLRKLESGIRGISHVIVDEIHERDLNSDFLL
VVLRDVVQAYPDVRIILMSATIDTTMFKEYFFNCPVIEVHGRAHPVQEYFLEDCIQMTQF
VPPPMDRKKKDKDEDGGDEDVNCNVICGPEYSPETKRAMSQLNEKETPFELIEALLKYIE
TLQVPGAVLVFLPGWNLIYSMQKHLEMNPHFGGHKYRILPLHSQIPREEQRRVFEPVPDG
VTKVILSTNIAETSITINDVVFVLDSCKQKVKLFTSHNNMTNYATVWASKTNLEQRKGRA
GRVRPGFCFHLCSRARFEKLETHMTPEIFRTPLHEVALSIKLLRLGPIGNFLSKAIEPPP
LDAVIEAEHTLRELDALDCNDELTPLGRILAKLPIEPRLGKMMIMGCIFNVGDAVCTISA
ASCFPEPFINEGKRLGFVHRNFAGTRFSDHVALLSVFQAWDEVRMGGEEAEIRFCEHKRL
NMPTLRMTWEAKVQLKDILVNVGFPEECLLNQVFNNVGPDNNLDVVISLLTFGSYPNVCY
HKEKRKILTTEGRNALIHKSSVNCPFSNHDMTYPSPFFVFGEKIRTRAISAKGMTLVSPL
QLILFGSKKITSDGEVVVLDDWIKLQIPHDLAAGVAALRAAMEGLVVEVTKDPEYIRSLD
PTNERLLNVIRLVSRPSSAGINLMATNPRFGDGPRPPKMPRTDFGGGGEFRGRGGGGGYR
GGGGGSWSGGGYRGGGGYQGGGGGFRGSGGYRGGGGGGGGGYRGYGGGGFRGSGGYRGSN
GGGGYRGSNGGGGYRGSNGGGGYRGGGGGGGGGGGGGGGGGGGGYGGGRGFRGGWGGNRG
GY
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atgatacaaacgccgtcaacaatggcggacattaagaacttcctatatgcttggtgtgga
aaaaagaagataacaccgaactatgacatccgagcagctgggaataaaaacagacagaaa
ttcgtgtgtgaggtgcgtgtggagggttacaattacattggcatgggaaattccaccaac
aagaaggatgctcagtccaatgctgcccgagattttgtgaattatcttgttcggacgaaa
gaaataagtcctgctgaagttcctgctctaggggcctgtgtacctgatggagttaatgaa
gaaggtggtggtggtggtggtggtggtgagtttggaaatctcccatccaactgtccacta
cctccacatctggctgtgaagaaggaaattgaaccttcagagctttctgcacccgttcct
ggagtcacaggtttgggctactctggttttggtaatgcccaatgggagcgaggagccaac
ctgcagcagtattactctaagagagaggaacaggaagacaaagcgacccttgaatcagag
gaagttgatctgaacgctggcctgcatgggaactggactctggacaatgccaaggcccgt
ctgaaccagttctttcagaaggagaaaaaccaaactgactacaagtacagccaagtgggg
cctgaccacaacaggagttttattgctgagatgacaatctttgtaagacagctgggtagg
aaggtttgtgcacgtgagcatggctctacaaagaagctggctgcccagtcttgtgcactt
tctcttgtccgtcagctttaccatttgggggttatagaagccttcacaggactgaccaag
aagaaagagggagaaagtgtggatgtttatgaagtgaatgtcagtgatgatctacagcag
caattgcacagtattgtgcaagaacttggcatccagatccctcctcctcctcaggacccc
agcagtccagtatctctggtacaagggaagttggctcactttgagccctcacaaaggcag
agcatggcgggagtggtgccatggtcgccaccgcaggtcaactggaacccctggaccagc
tccaacatcgatgaaggaccgctggcattttgtaccccagaacagatcagcacagacctg
ctgcaggagctcaactatcagcttgaacaggacaaaaatctgcagacgattctagaggaa
cgaagtcagctgccagtcaagaactttaaggagcaaatcatgtccgccattcacaatagc
ccagtggtcatcattcgtggagccaccggctgtggaaagaccactcaggttcctcagtac
atcttggatgaattcatacagggaggcagagcatctgaatgcaatatcgttgttacacag
ccgagacgtatcagtgctgtgtcagtgtcagaacgtgtatcttttgagagaggagaggag
gtggggaaaagctgtggttacagtgtgcgttttgagtctgtcctgcccagacctcatgcc
agcatcctcttctgcacagttggggttttgctgaggaagctggaatctggtatccgtggc
atcagtcatgtgattgtggatgaaatccatgagagggacttaaattctgatttcctgttg
gtagtgttgagagatgtggtccaagcttaccctgatgtgcgcatcatcctcatgtctgcc
accattgacaccaccatgtttaaggaatactttttcaactgtcctgtcatcgaggtgcat
ggacgtgcacatcctgtacaagagtatttcttagaagactgcattcagatgactcagttt
gtaccaccaccaatggaccggaagaaaaaagataaagatgaagatggtggagatgaagac
gtgaactgtaatgtcatctgtggacccgagtatagtcctgagaccaagcgtgccatgtct
cagctgaatgaaaaggaaactccattcgagctgattgaggctttgctgaagtacattgaa
acgctgcaagtaccgggggctgtgctagtcttcctgccaggctggaatctcatctattcc
atgcagaaacacctggagatgaacccacacttcggcggtcataaataccgaatcctgccc
cttcactctcaaatccccagggaagaacagaggcgagtgtttgagcccgtccctgacggt
gtgactaaggtcattttgtccacaaacatcgctgagaccagcatcaccatcaacgatgtg
gtctttgtccttgactcctgcaagcagaaagtgaagttgttcacttctcacaacaatatg
acaaactacgccacagtgtgggcctccaagaccaaccttgagcagaggaaggggcgagct
ggccgagtcagaccaggcttctgctttcacctgtgcagcagagctcgttttgaaaaactg
gagacccatatgactccagaaatcttccgcacgccgctgcatgaggtggcccttagcatt
aagctactgagactgggtcccatcgggaatttcctgtccaaagccattgagccgcctcca
ttggatgccgttattgaagctgaacatacgctgagagagctggatgctctggactgtaat
gatgagctgactccactgggacgcattctggccaaactgcccattgaaccacgtctggga
aagatgatgatcatgggatgcatctttaatgttggagatgcagtgtgcaccatctcagca
gcgtcctgtttcccagagcccttcatcaacgagggaaaacgtctcggctttgttcatagg
aactttgcaggcacacgtttctcagatcacgtggctttactctctgtcttccaggcctgg
gatgaagtccggatgggaggtgaggaggcagagatcaggttttgtgagcacaagaggctg
aacatgcccactttgaggatgacctgggaggccaaggtccagctgaaggacatccttgtt
aacgttggcttccctgaagagtgcctcctgaatcaggtgtttaacaacgtgggaccggac
aataacttggatgtggtgatctctctgctgacatttggctcttaccccaacgtgtgctac
cacaaagagaaaaggaagatcctgaccacagagggaagaaatgctctcattcacaaatcc
tcagtcaactgtcctttcagcaaccatgatatgacatatccatctcccttttttgtcttt
ggggaaaagatccgaactcgagccatctctgccaaaggaatgactctcgtcagtcctctt
cagctcattctgtttggctcaaagaagatcacgtctgatggagaagttgttgtgcttgat
gattggatcaaattgcagattccccatgatttagctgctggtgtggcagctctgagggca
gcaatggaaggcctggtggtggaggtgaccaaagacccagaatatattagaagtttggat
cccacgaatgaacgcttgctgaacgtcattcgacttgtgtctagaccctcgtcagcaggc
atcaacctcatggccactaacccacgctttggagatggtccacgtccacccaagatgccc
cgtactgattttggaggtggtggagagttcaggggccgtggaggcggaggaggatacaga
ggtggcggcggtggatcctggtctggtggaggatacagaggaggtggtggataccagggt
ggtggaggcggcttcagaggatcgggagggtatcgtggtggtggtggcggcggtgggggt
ggatacagggggtatggtgggggtggtttcaggggatctggtggatacagaggatctaat
gggggtggaggatacagaggatctaatgggggtggaggatacagaggatctaatgggggt
ggaggatacagaggaggtggtggaggtggtggaggaggtggaggtggtggaggaggtgga
ggtggtggaggatatggaggagggaggggattcagaggtgggtggggcggaaaccggggt
ggttattaa
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integrated database retrieval system
