Ctenopharyngodon idella (grass carp): 127505465
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Entry
127505465 CDS
T08802
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04622
RIG-I-like receptor signaling pathway
cide04623
Cytosolic DNA-sensing pathway
cide05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
127505465
04623 Cytosolic DNA-sensing pathway
127505465
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127505465
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cide04054
]
127505465
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127505465
Pattern recognition receptors [BR:
cide04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
127505465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
ResIII
DEAD
Helicase_C
SNF2-rel_dom
PhoH
AAA_19
AAA_22
Motif
Other DBs
NCBI-GeneID:
127505465
NCBI-ProteinID:
XP_051736996
LinkDB
All DBs
Position
22:17022339..17036078
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AA seq
947 aa
AA seq
DB search
MYELEKENLRRLSDYIAQFLQPSLIKTFMTTYFDKETVEKIINTEETSSVTKAAQMLLDQ
MCYLEEVGWFQAFLDILYASEYTGLHKAIKEWNFSELEELDVHRKLLERIEPSITKLIKP
SELLAHMNDCLNIRECEMIQAVEIQRGHIAASEKLVNSLLRSDKPNWFKVLKIALDACRF
DQALELLESNGGGTAAKGCGSDEEAEAMTTETTTTVCFEFREEPESEDMLMSTNDMTPTE
TPSKFTGEHDRSGEIKLREYQKELTAAAVQGQNTIICAPTGCGKTIVALAICEYHLKQSP
RRAKIVFLATKVDVYEQQYKLFMKHFSRTDPSIRVMGMCGDMDLSVQWLIENHDIVVMTA
QILVNALQSGEVPSLELLSLILLDECHNTTGKHPYNNIMTRYLDTKLSSSTHSLPQIVGL
TASVGIGSFKNRLEAENNILQLCANLDTRVITTVKKQLDELKTYVHTPEKEFFEVSKHTY
DPFIRIIKNIMSNIEQLAQKAFNIESLSNIQNREYGSQKYEQWIVSVQKSCRVIQMKDTN
EERRICRELYNYTEHLRKYNDALIINEDARTKDALDYLDGFFEQVRNAGYDETERKLTAL
YDSQRPQLLHLASEGQQNPKLEELKFILEEEYQNNDETRTVLFVKTRALADAMKKWIDDT
DSLKFLKPGVLIGKGRKSNFTGSVMTLTSKKGVLDSFKSTDQNSDQSKILIATSVADEGI
DIPQCNLVLMYEYVGNVVKMVQVRGRGRAQGSRCFLISSSKECIEKERINMIKEKIVEEA
IVQLQSHPAELSNKVDVLQREDKARRDHVSASPDKPKTRGSYQLLCVKCKKFACLSDDLR
VVQESHHIALDRSMFERCITVPHKNPKTFQGFSKKEKMLCAECKRDWGLVASYLTIQDLP
LLKIESFVVQNCDTHQQFYFRKWRDVTFAIQKFDMTEITPQTWPLRD
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgtacgagctggaaaaggagaatttgcggcgcttgagcgattatatcgcgcagttttta
caaccgtcacttatcaaaaccttcatgacgacgtactttgataaagagacggtggaaaag
attatcaatacggaggagacttcgtctgtgaccaaagctgcccagatgctgctggaccag
atgtgttatctggaagaagtgggctggtttcaggcctttctggacatcctgtatgcctca
gaatataccggtctgcacaaggccattaaggagtggaacttcagtgagttagaggaactg
gatgtgcaccggaagcttctggaaagaatcgaaccgtcaatcaccaaactcataaagccc
agtgagctgctcgcgcacatgaacgactgtctcaacatcagagagtgtgaaatgatccaa
gcggtggaaatccagcgcggtcatatagctgccagtgagaaactagtgaacagtctcctg
cgctcagataaacccaactggtttaaggtgctgaagattgcgctggatgcctgcagattc
gatcaggcgctggagctgctagagtccaatggaggtggtacggctgcgaagggctgcgga
tcggatgaggaggcagaagccatgacgacagaaaccacgacgacagtgtgttttgagttc
agagaggagcctgagagtgaagacatgctgatgagcacaaacgacatgactcccacagag
acacctagcaagttcacaggggagcatgatcgttcaggtgagattaagctaagggaatat
cagaaggagctgacggccgctgctgtccaggggcaaaacaccatcatctgcgcccctaca
ggatgtggaaaaacaattgtggccttggccatctgtgaataccacctgaaacagagtccc
agacgagcaaagattgtgttcttggcaaccaaggttgacgtctatgaacaacagtacaag
cttttcatgaaacacttttcccgcaccgatcccagcatcagggtgatgggtatgtgcggt
gatatggatctgtccgtgcaatggctcatagagaatcatgatatcgtggtgatgacggct
cagatcctggtgaacgcacttcagagcggggaggtgccgtccctggagctgctgtctctc
atcctgctggacgagtgtcacaacacgaccggaaaacacccgtacaacaacatcatgacc
cgctacctggacaccaaactctcctccagcacacactcactgccacagattgtgggcctg
acggcgtcggttggcatcggttcattcaagaacaggctggaggcggagaacaatatctta
cagctctgtgccaacctggacaccagggtcatcaccacggttaagaaacagctggatgag
ctcaagacgtacgtgcacacacctgagaaagaattttttgaggtttccaagcacacgtat
gaccccttcatcagaataatcaaaaacatcatgagtaacatcgagcagctggcgcagaag
gccttcaacatcgagagcctgtcaaacatccagaaccgcgagtacggctctcagaaatat
gagcagtggatcgtctcagttcagaagagctgcagagtcatacagatgaaggacacaaac
gaggagagacgaatctgcagagaactctacaactacactgaacacctgcggaaatataac
gatgctctgatcattaatgaggacgcccgcactaaagatgctctcgattatctggacggg
ttttttgagcaggtccgaaacgccggctacgacgagacggagaggaaactcacggcgctc
tacgacagtcagcggccgcagttgctacatttggcctccgaggggcagcagaaccctaaa
ctagaggagctgaagttcatcctggaggaagagtatcaaaacaacgacgagacgcgcacc
gtcctgttcgttaagacacgcgccctcgctgacgccatgaagaaatggatcgatgacacc
gattccctgaagttcctgaagcctggagttctgataggaaaaggacgaaaatccaacttt
accggctcagtaatgacgctgaccagtaagaagggggttttggactcttttaagagcaca
gatcagaactcagatcagagtaagatactcatcgccacatcagtcgctgatgaaggcatc
gatatcccacagtgcaacctggttctgatgtatgaatatgtgggtaacgtggtgaagatg
gtgcaagttcgaggtcgcggtcgtgcgcagggcagccggtgtttcctgatctccagtagt
aaggaatgcattgagaaggagcgcataaacatgattaaggagaaaattgtggaggaggcc
atcgtccaactgcagagccaccccgctgaactcagtaacaaggtggatgtgttgcagaga
gaagataaggcccggagggatcacgtcagcgccagtcccgacaaacccaaaacacgcggc
agctaccagctcctttgcgtcaagtgcaagaagtttgcatgcttgagtgacgacctcaga
gtcgtgcaggagtctcatcacatcgctctggatcgctccatgtttgaacgctgtataact
gttcctcataagaacccaaaaaccttccaaggcttcagtaagaaagagaagatgctctgt
gccgagtgcaaacgtgactggggcctcgtcgcctcttacctcacgatccaggatctgccg
ctgttgaagatcgagagtttcgtggtgcagaattgcgacactcaccagcagttttacttc
aggaaatggcgcgacgtgacatttgccatccaaaagtttgacatgacggagatcacgcct
caaacatggccgctgagagactga
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