Ctenopharyngodon idella (grass carp): 127509548
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Entry
127509548 CDS
T08802
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127509548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cide03041
]
127509548
Spliceosome [BR:
cide03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
127509548
Complex C
U5 SnRNP specific factors
127509548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
127509548
NCBI-ProteinID:
XP_051744313
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All DBs
Position
3:complement(25138145..25150968)
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AA seq
971 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDEELDAEDREADEADEEEDDEDQAEVDEEGGSMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKLKRFTLMEQELPVTVYDMEFLAD
LMDSSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDSDLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSAVRLSDGIVLFIDAAEGVMLNTER
LIKHAVQERLAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGLLSTYSTDESLIVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYMEFAKRLWGDIYFNPKTRKFTKKAP
NSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVQHIPSPQGGAKAKIEHSYTGGLDSDLGETMSECDPDGPLMCHTTKM
YSTDDGVQFHAFGRVLSGTLQAGQPVKVLGENYSLEDEEDSQICTIGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggagacggatctttatgatgagtttggaaactatataggaccggagctggactctgat
gaagatgaggaactagatgcagaggaccgggaggctgatgaggcagatgaggaggaggat
gatgaagaccaggctgaggttgatgaggagggtggtagtatggaggtggttttgcatgag
gataaaaagtattatcccacagctgaggaggtttatggtcctgaggtggagaccatcgtc
caagaagaagatacacaaccattgacagagcccatcataaaacctgtaaagttgaagcgg
tttactctgatggagcaggagcttccagtcacagtctatgacatggagttccttgctgat
ttgatggacagctcagaactgatcagaaatgtcactttgtgtggacacttacaccatggc
aagacatgctttgtggactgccttattgaacagactcatcctgaaatccgcaagagagat
gacagtgatttacgatacacagatatcctcttcacagagcaagagaggggagttggcatc
aagagtactcctgtaaccatggtgctacctgactcacggggcaaatcctacctcttcaac
atcatggacacgccaggtcatgtgaatttctctgatgaagtgacatctgctgtcagactg
tctgacggcattgtgctttttatcgatgctgccgagggggtgatgcttaacactgagcga
ctgatcaagcacgcagtgcaggagaggttggccatcactatctgtattaataaagtagat
cgtctgatcgtggagctcaagctgccccctactgatgcctactacaagcttcgccacatt
gtggatgaggtcaatggcttgctgagcacgtactccacagatgagtctctgattgtgtct
cccctgttgggaaacgtgtgtttcgcttcctcgcaatacagtatctgcttcactcttggc
tccttcgccaaaatctattcagacacctacggtgatatcaactacatggagtttgctaaa
agactgtggggagacatttacttcaaccccaaaacgaggaaattcacaaagaaagcccct
aacagcaactctcagcgcagctttgtcgagtttgtgctggagccgctgtacaagattctt
tcacaggtggtgggggatgtggatacgtctctgcctcgtgtcttggatgagctcggcatt
catctgaccaaagaggagttaaagcttaacatcagacctctgctgcgcctcgtctgtaac
cgcttctttggagagtttacaggctttgtggacatgtgtgtgcaacacataccttctcct
caagggggtgccaaagccaagatagagcacagctacacaggtggactggattcagacctc
ggagagacaatgtctgagtgtgaccctgatggtccactgatgtgccacaccactaagatg
tacagcacagatgacggcgttcagttccacgcattcggtcgagtcctgagtggaaccctg
caggcgggccagccggtgaaggttctgggagagaactacagcctggaggatgaagaggac
tcacagatctgcactatcggacgtctgtggatttctgtcgctaggtatcagattgaagtg
aatcgtgttcctgctggtaactgggtgctgattgagggctgcgaccagcctattgttaaa
acggccacaatcacagagcctcgtggaaatgaagaggctcagatcttcaggccattgaag
tttaacactgcatcagtgataaaaatagctgtggagccggtcaatccctcagaactgccc
aagatgttggatggactcagaaaagtcaacaagagttatccttcacttacaacaaaggtg
gaggagtcaggtgaacatgtgattcttggcacaggtgagctgtacctggactgtgtaatg
cacgacctgcggaagatgtactctgagattgatattaaggtagctgatcctgtggtgact
ttttgtgagactgtggtggagacatcctccctgaagtgttttgctgaaacacccaataaa
aagaataagatcaccatgattgccgagccgttggagaagggtctagccgaagacattgag
aacgaggtggtgcagatcacatggaacaggaaaaagttgggagagtttttccagaccaag
tatgactgggatttgctagcagctcgttccatctgggcttttggacctgacacaactggg
cccaacatcttagtagacgatactttgccctctgaggtagataaagctctcctcggctca
gtgaaggacagcattgtacagggcttccagtggggcacacgcgagggtcctttatgtgat
gaaccaatccgcaacgtgaagtttaagatcctagatgccgtgatcgcacaggaaccgctg
catagaggaggaggacaggtcattcctacagctcgcagagtcgtctattctgcctttctc
atggccacgcccaggctgatggagccctattactttgtggaggttcaggcgcctgctgac
tgtgtttctgctgtgtacacggtgctggcacgcaggagaggtcatgtgacgcaggatgcc
ccaatccctggctctcctctctacactatcaaggctttcattccagctattgactcgttt
ggctttgaaacggatctccgcacacacacgcagggccaggcctttgcgctcagtgtgttc
caccactggcagattgttcccggtgatcctctggataagagcattgtgattcgtcctcta
gagcctcagccggcccctcatctggccagagagtttatgatcaaaacccgcaggcgcaaa
ggattgagtgaggatgtcagtatcagcaagttcttcgatgaccctatgttgttggagcta
gccaaacaggatgtggtgctgaactacccgatgtga
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