Ctenopharyngodon idella (grass carp): 127512173
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Entry
127512173 CDS
T08802
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04010
MAPK signaling pathway
cide04137
Mitophagy - animal
cide04141
Protein processing in endoplasmic reticulum
cide04210
Apoptosis
cide04217
Necroptosis
cide04621
NOD-like receptor signaling pathway
cide04622
RIG-I-like receptor signaling pathway
cide04920
Adipocytokine signaling pathway
cide05132
Salmonella infection
cide05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127512173
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
127512173
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
127512173
09143 Cell growth and death
04210 Apoptosis
127512173
04217 Necroptosis
127512173
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
127512173
04622 RIG-I-like receptor signaling pathway
127512173
09152 Endocrine system
04920 Adipocytokine signaling pathway
127512173
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127512173
09171 Infectious disease: bacterial
05132 Salmonella infection
127512173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127512173
04121 Ubiquitin system [BR:
cide04121
]
127512173
Enzymes [BR:
cide01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127512173
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
127512173
Ubiquitin system [BR:
cide04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
127512173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
zf-C3HC4
TRAF3_RING
zf-C3HC4_2
zf-RING_5
zf-C3HC4_4
Sina_ZnF
zf-C3HC4_3
DEC-1_N
zf-RING_UBOX
zf-RING_4
zf-RING_6
zf-RING_2
zf-TRAF_2
MATH
zf-ACC
Motif
Other DBs
NCBI-GeneID:
127512173
NCBI-ProteinID:
XP_051748791
LinkDB
All DBs
Position
5:complement(28824902..28849133)
Genome browser
AA seq
601 aa
AA seq
DB search
MCCTEKRHVVKCVERYVSLWSHARSGIMAAQEPSPPSSLEGNKPGFPKKILANKLEDKHL
CNICLKILRRPFQAQCGHRFCSYCFTKAVSSGPQKCSACIKEDIFEEPTSILKQGCAFPD
NAAKREVEALEAVCINEECSWTGTIKEYEANHEGKCDYRILPCPSCKELLRANEVERHNE
RECPERTLNCKYCKEPFHFKNIKAHDEICPKYPMICEGCAKKKIPREKYVDHIKLCTKFR
TPCRFHVVGCDMTVEKEKIHDHEQACSYEHLNLLLHFIMGIKVNLESLQPQNLELASHKI
HELHQSLRELELKMGQLSGAGAPVQGACAPLPPPPAPTLGTSFTPLPTAVGAALELQLHS
EKTKVVELSRRCQELELKVSTFENIVCVLNREMERSATTMEAYNRQHRLDQDKIEILNNK
VRQLERTVGLRDLSIVEMEAKMREMSAATYDGVFVWKISDFSKKRQDAVAGRAPAMFSPA
FYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLMLLDQNNR
EHIIDAFRPDISSSSFQRPVSDMNIASGCPLFCPLSKLDSKNSYIRDDTIFIKAIVDLTG
L
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtgctgtacggaaaaaaggcatgtggtgaaatgtgtagaaagatacgtgtctctttgg
tcacatgcgcgctcgggaataatggctgcacaggaaccctcaccaccatcttcattagaa
ggcaacaaacctggcttccccaagaaaatactcgccaacaagctggaggacaagcatctg
tgtaatatatgtctgaaaatccttaggagaccgtttcaggcgcagtgcggacatcgtttc
tgttcatattgttttactaaagcagtgagctccggtccacagaaatgcagtgcttgtata
aaagaagacatatttgaagaaccaacatcaattttaaaacagggctgtgcttttcctgat
aatgctgccaagagagaagttgaagcgcttgaagctgtctgcatcaatgaggaatgtagc
tggacaggcaccatcaaagaatatgaggcaaaccatgaaggaaagtgcgactaccggatc
cttccctgcccatcatgcaaagagcttctgagagccaatgaagttgaacgtcacaatgag
agagagtgcccagaaagaactcttaattgtaaatattgcaaggagccttttcattttaaa
aacattaaggcccatgatgagatatgccctaaataccccatgatttgtgaaggttgtgcc
aagaaaaaaattccaagagagaaatatgtggaccacattaaactgtgcaccaaattcaga
acaccttgcagatttcatgttgtaggctgtgatatgacggtggaaaaggagaagatccac
gaccatgagcaagcctgttcctatgagcacttaaaccttctgctgcatttcatcatgggc
atcaaggtgaacttggagagtctgcagcctcagaatttggagctggccagccataagatc
catgagctgcatcagtctctacgggagctagagctgaagatgggccagctgagtggagca
ggggctcccgtgcagggggcctgcgcaccgctgcctccaccaccggctccaacgctgggt
acgtctttcacccccctccctactgctgttggggcagcgttggagctgcagctacacagc
gagaagaccaaagtggtggagcttagccgccgctgtcaggagctggagctgaaggtaagc
acctttgagaacatcgtctgtgtgcttaaccgtgagatggagcgctccgccaccaccatg
gaggcctataaccgccaacaccggcttgaccaggacaagattgagatactcaacaacaag
gtacggcagttggaaaggacggtgggccttagggatctctccatcgtggagatggaggca
aagatgagggagatgtctgctgccacatacgatggtgtctttgtttggaagatctctgac
ttctcgaagaagagacaggatgctgtagccggacgggcacctgctatgttttcacctgca
ttttacacaagcaaatatggctataagatgtgtttgcgcatctatctgaatggggacggg
acgggacgtggtactcacttgtctctgttcttcgtggtgatgaggggacacagtgatgcc
ttgctcaagtggcctttcaatcagaaggtcactctcatgttgctggatcagaacaacagg
gagcacatcatcgatgccttccggccagacatttcctcttcctccttccagaggcctgtg
agtgacatgaacattgccagcggctgccctctcttctgccctctttccaaactagactcc
aagaactcctacatccgagatgatactatcttcatcaaggccattgttgacctcacaggc
ctttaa
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integrated database retrieval system