KEGG   Ctenopharyngodon idella (grass carp): 127512173
Entry
127512173         CDS       T08802                                 
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
cide  Ctenopharyngodon idella (grass carp)
Pathway
cide04010  MAPK signaling pathway
cide04137  Mitophagy - animal
cide04141  Protein processing in endoplasmic reticulum
cide04210  Apoptosis
cide04217  Necroptosis
cide04621  NOD-like receptor signaling pathway
cide04622  RIG-I-like receptor signaling pathway
cide04920  Adipocytokine signaling pathway
cide05132  Salmonella infection
cide05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cide00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    127512173
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    127512173
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    127512173
  09143 Cell growth and death
   04210 Apoptosis
    127512173
   04217 Necroptosis
    127512173
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    127512173
   04622 RIG-I-like receptor signaling pathway
    127512173
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    127512173
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    127512173
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    127512173
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cide03019]
    127512173
   04121 Ubiquitin system [BR:cide04121]
    127512173
Enzymes [BR:cide01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     127512173
Messenger RNA biogenesis [BR:cide03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     127512173
Ubiquitin system [BR:cide04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    127512173
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf zf-C3HC4 TRAF3_RING zf-C3HC4_2 zf-RING_5 zf-C3HC4_4 Sina_ZnF zf-C3HC4_3 DEC-1_N zf-RING_UBOX zf-RING_4 zf-RING_6 zf-RING_2 zf-TRAF_2 MATH zf-ACC
Other DBs
NCBI-GeneID: 127512173
NCBI-ProteinID: XP_051748791
LinkDB
Position
5:complement(28824902..28849133)
AA seq 601 aa
MCCTEKRHVVKCVERYVSLWSHARSGIMAAQEPSPPSSLEGNKPGFPKKILANKLEDKHL
CNICLKILRRPFQAQCGHRFCSYCFTKAVSSGPQKCSACIKEDIFEEPTSILKQGCAFPD
NAAKREVEALEAVCINEECSWTGTIKEYEANHEGKCDYRILPCPSCKELLRANEVERHNE
RECPERTLNCKYCKEPFHFKNIKAHDEICPKYPMICEGCAKKKIPREKYVDHIKLCTKFR
TPCRFHVVGCDMTVEKEKIHDHEQACSYEHLNLLLHFIMGIKVNLESLQPQNLELASHKI
HELHQSLRELELKMGQLSGAGAPVQGACAPLPPPPAPTLGTSFTPLPTAVGAALELQLHS
EKTKVVELSRRCQELELKVSTFENIVCVLNREMERSATTMEAYNRQHRLDQDKIEILNNK
VRQLERTVGLRDLSIVEMEAKMREMSAATYDGVFVWKISDFSKKRQDAVAGRAPAMFSPA
FYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLMLLDQNNR
EHIIDAFRPDISSSSFQRPVSDMNIASGCPLFCPLSKLDSKNSYIRDDTIFIKAIVDLTG
L
NT seq 1806 nt   +upstreamnt  +downstreamnt
atgtgctgtacggaaaaaaggcatgtggtgaaatgtgtagaaagatacgtgtctctttgg
tcacatgcgcgctcgggaataatggctgcacaggaaccctcaccaccatcttcattagaa
ggcaacaaacctggcttccccaagaaaatactcgccaacaagctggaggacaagcatctg
tgtaatatatgtctgaaaatccttaggagaccgtttcaggcgcagtgcggacatcgtttc
tgttcatattgttttactaaagcagtgagctccggtccacagaaatgcagtgcttgtata
aaagaagacatatttgaagaaccaacatcaattttaaaacagggctgtgcttttcctgat
aatgctgccaagagagaagttgaagcgcttgaagctgtctgcatcaatgaggaatgtagc
tggacaggcaccatcaaagaatatgaggcaaaccatgaaggaaagtgcgactaccggatc
cttccctgcccatcatgcaaagagcttctgagagccaatgaagttgaacgtcacaatgag
agagagtgcccagaaagaactcttaattgtaaatattgcaaggagccttttcattttaaa
aacattaaggcccatgatgagatatgccctaaataccccatgatttgtgaaggttgtgcc
aagaaaaaaattccaagagagaaatatgtggaccacattaaactgtgcaccaaattcaga
acaccttgcagatttcatgttgtaggctgtgatatgacggtggaaaaggagaagatccac
gaccatgagcaagcctgttcctatgagcacttaaaccttctgctgcatttcatcatgggc
atcaaggtgaacttggagagtctgcagcctcagaatttggagctggccagccataagatc
catgagctgcatcagtctctacgggagctagagctgaagatgggccagctgagtggagca
ggggctcccgtgcagggggcctgcgcaccgctgcctccaccaccggctccaacgctgggt
acgtctttcacccccctccctactgctgttggggcagcgttggagctgcagctacacagc
gagaagaccaaagtggtggagcttagccgccgctgtcaggagctggagctgaaggtaagc
acctttgagaacatcgtctgtgtgcttaaccgtgagatggagcgctccgccaccaccatg
gaggcctataaccgccaacaccggcttgaccaggacaagattgagatactcaacaacaag
gtacggcagttggaaaggacggtgggccttagggatctctccatcgtggagatggaggca
aagatgagggagatgtctgctgccacatacgatggtgtctttgtttggaagatctctgac
ttctcgaagaagagacaggatgctgtagccggacgggcacctgctatgttttcacctgca
ttttacacaagcaaatatggctataagatgtgtttgcgcatctatctgaatggggacggg
acgggacgtggtactcacttgtctctgttcttcgtggtgatgaggggacacagtgatgcc
ttgctcaagtggcctttcaatcagaaggtcactctcatgttgctggatcagaacaacagg
gagcacatcatcgatgccttccggccagacatttcctcttcctccttccagaggcctgtg
agtgacatgaacattgccagcggctgccctctcttctgccctctttccaaactagactcc
aagaactcctacatccgagatgatactatcttcatcaaggccattgttgacctcacaggc
ctttaa

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